Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq24 134 1e-26 >seq24 Length=169626 Score = 134 bits (148), Expect = 1e-26 Identities = 299/449 (67%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 16943 TTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA 17002 || ||||| | || | || || ||||| ||| || | |||||||| | |||| Sbjct 86562 TTGAGATGACTGAAAAGCAAGCACGCGAAGTCGGTGTGCATGCCCTCGTCACGCGAGATA 86503 Query 17003 AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCG 17062 || || || || || || | ||||||||| || || ||||| | ||| || || | | Sbjct 86502 AGCTCATTGGAGAACGTGAGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAG 86443 Query 17063 GCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG 17122 || || || ||||| ||||| |||||||| || | || || || | | || || ||| Sbjct 86442 GCAAAGGAACCAGAGAAGAAGATACCCTCCACAGCCGCGAAAGCCACGAGCCGCTCCGCG 86383 Query 17123 TACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAA 17182 | | | || |||| | ||||| | | |||| || || || | ||| |||||| Sbjct 86382 AAGGCGGACTCCTTGTCAGAGATCCAGTGCAAAGCCCAGTCCGCCTTCTTCTTGATGCAA 86323 Query 17183 TCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 ||||| || ||||| | || | | ||| | || | || | || ||||| Sbjct 86322 GGAATCGTCTCGATGGCGTCGAAAAGGTGCTCGCGCTGCTTGGGATCCTTGATGTACGTG 86263 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 |||||||| || ||| | || ||||| ||||||||||| ||||| || ||||| Sbjct 86262 TCGATGAGCAGCGAGTATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 86203 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362 ||||| || || || || || || || | |||| || || | || || |||||| Sbjct 86202 AAGCAGCGTGCCTCGGCGGCCTGGACCTCATTGGAGAACCGCTCGACAAGGTTCTCGTTC 86143 Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 ||||||||||| |||||||| || || Sbjct 86142 ACGATGCCGTCCGAGGCGGCGAAGAAGGC 86114 Score = 132 bits (146), Expect = 5e-26 Identities = 288/431 (67%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| || || ||| || | |||||||||| ||||||||| |||||||| || ||| Sbjct 83963 AGACACGCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTC 84022 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 ||||| |||||| || || ||||| | ||| || || |||||||||||||| || ||| Sbjct 84023 AACCCCGGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAG 84082 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || | |||||||| | ||||| |||| | | || || || | | || Sbjct 84083 AACACGCCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGCAAACACTGAACGCTCGTCC 84142 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 |||||| | | |||| || || || | || || || || || ||||| Sbjct 84143 TCAATCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGTCGATGGCG 84202 Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 | || | | | ||| |||| | |||||||| |||||||| || |||| Sbjct 84203 TCGAACAGGAACGCGCGTTCAGCGGGGTCCTTGATATACGTGTCGATGAGCAGCGAGTAC 84262 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 | || ||||| | ||||| || ||||| || ||||||||||| || || || || Sbjct 84263 GTCTCCGAGTGCACATTCTCGATCATGATCTGGAAGCCGTAAAAGCAGCGCGCCTCGGCG 84322 Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 || || || |||| || || | ||||| ||||||||||||||||| ||| Sbjct 84323 GCCTGTACCTCGTTAGAGAACCGCTCGACGAGATTCTCGTTCACGATGCCGTCCGAGGCG 84382 Query 17381 GCGAAAAACGC 17391 ||||| || || Sbjct 84383 GCGAAGAAAGC 84393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517540579807680