Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq403 129 7e-25 >seq403 Length=43082 Score = 129 bits (142), Expect = 7e-25 Identities = 224/323 (69%), Gaps = 2/323 (1%) Strand=Plus/Plus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 ||||| ||||| ||| | ||| || ||| |||| ||||||||||| |||||||| Sbjct 18139 TAGACACTCATCTTCATCGCGATACTCGGGTGCGGGTCGTAGCCCTCCACAACAAAGTCC 18198 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGC 145656 || | | |||||||| |||| || ||| | | | | || | || || || Sbjct 18199 TCGTTCGTAAAGTCATCGATGTTTTCTACCTTGCGCGGCCATCGGATTTTAGGGAACGGA 18258 Query 145657 CGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGC 145715 || || |||| | || ||||| | ||| || | || ||||| | | ||||||||||||| Sbjct 18259 CGCGG-CTCCCGCTCGAGCTGAACCTTGAGCGCTTCAACGTGATCGCGGTAGACGTGCGC 18317 Query 145716 GTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTA 145775 ||| || || || || || || ||| | |||| | ||| || ||||| | Sbjct 18318 GTCGCCAAGCTGTATTATCAACTCGTGAGGTTCGGTGTCCGTAACGTGCGCCACCATATG 18377 Query 145776 GGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCG 145835 ||| ||||||| ||| ||| ||||||||||| | || || || | ||| | ||||| Sbjct 18378 GGTGAGCAGGGCGTAAGAGGCAATGTTGAAGGGAATACCGAGGCCAAGGTCGGCGGAGCG 18437 Query 145836 CTGGTACAGCTGGCAGGAGAGCT 145858 |||||||| | |||||||||||| Sbjct 18438 CTGGTACATCAGGCAGGAGAGCT 18460 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 145995 GAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAA 146054 |||||| |||||||||| || |||| | | | ||||| |||| || || || Sbjct 18674 GAGCTGATCCACGCCCTTGCCGGTATAATTGGCGTCGCAGTCCTCGTATCGTGCGCCAAA 18733 Query 146055 GTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTG-TGCCCCAGCC 146113 ||| ||||| |||||||| || |||||||| ||||| || ||| | | || || | | Sbjct 18734 GTGTCTCCATTGGAACCCATATACGGGCCCTAGGTCGCCCT-CTCGCCGATGTCCTAAAC 18792 Query 146114 CGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGG 146173 || | ||||||| ||| || ||||| | ||||| ||||||| |||| |||||| Sbjct 18793 CGCGCTTCTCGAGGAACTCCTTCGAGCCGTTACCATCCCAAATCTTGATGCCCTTCGCGG 18852 Query 146174 AGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTC 146222 | |||| |||||||||||| | || | |||||||| | ||||| || Sbjct 18853 ACAGCTGCTTGGAGTCCGTGCATCCGCGTATGAACCATAAGAGCTCCTC 18901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590071076255040