Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq24 419 2e-112 seq460 120 3e-22 seq55 104 2e-17 seq121 96.9 4e-15 seq112 82.4 8e-11 >seq24 Length=169626 Score = 419 bits (464), Expect = 2e-112 Identities = 487/655 (74%), Gaps = 9/655 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | ||||||| ||||||| Sbjct 85985 ATTTGGCAGATGTACAAGAAGGCTGAGGCTTCATTCTGGACTGCCGAGGAGATGGACCTT 86044 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||| ||| | ||| | |||||| | ||||| ||||||||| | Sbjct 86045 TCCAAGGACCTCCACGATTGGAACAACCGCCTCAACGACGATGAGCGTCATTTCATCTCG 86104 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||| ||||| ||||||||| ||||||||||| |||||||| || |||||||| Sbjct 86105 CACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACCTTGTCGAGCGG 86164 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | | ||||| |||| |||||||| || |||||||||||||| |||||| ||| Sbjct 86165 TTCTCCAATGAGGTCCAGGCCGCCGAGGCACGCTGCTTCTACGGCTTCCAGATCATGATG 86224 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 |||||| | |||||||| | || ||| ||||||||||||||| | | | || Sbjct 86225 GAGAACATCCACTCGGAGACATACTCGCTGCTCATCGACACGTACATCAAGGATCCCAAG 86284 Query 116933 GAG---AAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 || ||| || | || |||||||||||||||| || ||| |||| ||||||| Sbjct 86285 CAGCGCGAGCACC---TTTTCGACGCCATCGAGACGATTCCTTGCATCAAGAAGAAGGCG 86341 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| ||| ||||||| | | || ||| ||||||||| ||||| || ||||| Sbjct 86342 GACTGGGCTTTGCACTGGATCTCTGACAAGGAGTCCGCCTTCGCGGAGCGGCTCGTGGCT 86401 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 |||||||| || ||||| ||||||| || || || ||| |||| || ||||||||| Sbjct 86402 TTCGCGGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAAG 86461 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || |||||||| |||||||| || || ||| ||| ||||| ||||| | |||||||| Sbjct 86462 AAGCGCGGCCTGATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGGC 86521 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 |||| |||||| || || ||||| |||| ||| | | ||| || | ||| | Sbjct 86522 ATGCACACCGACTTCGCGTGCTTGCTTTTCAGTCATCTCAAGAGGCGCCCCCACCCGGAG 86581 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 | || | | ||| |||| || |||||||| ||||||||| ||| | |||| Sbjct 86582 ATCATCCGTCAAATCATCACTGAGGCGGTCGCTATCGAGCAGGAGTTCTTGACCG 86636 Score = 331 bits (366), Expect = 1e-85 Identities = 472/658 (72%), Gaps = 15/658 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || ||| | |||||||||||||||||||||||| | |||| Sbjct 84522 ATATGGCAGATGTACAAGAACGCCCAAGCGTCGTTCTGGACCGTCGAGGAGATCAACCTC 84463 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 |||| ||| | |||||| | | | |||| ||||||||||| |||||| Sbjct 84462 GCCAACGACCTCATGGACTGGAACTACAAGCTCAACGCGAACGAGCGCCACTTCATCTCC 84403 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||| || || || ||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 84402 TACGTACTCGCTTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAATCTCGTCGAGCGG 84343 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || | ||||| |||| ||||||||||| ||||| |||||||| |||||| || Sbjct 84342 TTCTCTAACGAGGTACAGGCCGCCGAGGCGCGCTGCTTTTACGGCTTCCAGATCATGATC 84283 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA---CGTGCGCTCTTCG 116929 ||||| ||||||||||| | ||| ||| |||||||||||||| | | | | | Sbjct 84282 GAGAATGTGCACTCGGAGACGTACTCGCTGCTCATCGACACGTATATCAAGGACCCCGCT 84223 Query 116930 GAGGAGAAGCTCCGTT--TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 || | || |||| |||| |||||||||| || || ||||| || |||||| Sbjct 84222 GA----ACGC-GCGTTCCTGTTCGACGCCATCGACACCATCCCGTGTATCCGTAAGAAGG 84168 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTG 117046 | || |||||| |||||||||| | || ||| | | | || | ||| | ||||| Sbjct 84167 CGGACTGGGCGTTGCGCTGGATTG-AGGACGAGCGTTCAGTGTTTGCGGAGAGGCTGGTC 84109 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || ||||| ||||||||||| ||||| || || ||||||||||| || ||||| Sbjct 84108 GCATTTGCGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTTCTGGCTG 84049 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || || | ||||| || |||| ||| |||||||| ||| | | |||||| Sbjct 84048 AAGAAGCGGGGGTTGATGCCGGGGTTGACGTTCTCTAACGAGCTTATCAGCCGAGACGAG 83989 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG 117226 ||| |||| ||||||||| ||| | || ||| | ||| || || |||| | || Sbjct 83988 GGTATGCACACCGACTTTGCGTGTCTCCTCTTCCACCATCTGCGGCGAAAACCGCACCCG 83929 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 |||||| | ||||| || || || || | || || || |||||||||| Sbjct 83928 AAGCGCGTGCTGCGCATCGTAACTGAGGCAGTAGAGATTGAAAAGGAGTTCCTCACCG 83871 >seq460 Length=141031 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| |||||||| |||| ||||| | | Sbjct 61326 ATGCAAATCTTCGTTAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCG 61267 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||| ||||| | |||||| Sbjct 61266 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 61207 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| ||||| || || | ||||| || ||||||||| Sbjct 61206 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTTTCGGACTACAAC 61147 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| | || || || || || Sbjct 61146 ATTCAGAAGGAGTCGACCCTTCACCTCGT 61118 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || || |||| ||| || || ||||| || |||| ||||| || ||| Sbjct 62139 GACCAGCAGCGTCTTATCTTCGCCGGGAAGCAGCTTGAGGACGGCCGCACTCTTTCTGAC 62080 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||||||||| ||||||| ||||| || Sbjct 62079 TACAACATTCAGAAGGAGTCCACGCTTCATCTCGT 62045 >seq55 Length=161460 Score = 104 bits (114), Expect = 2e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 || ||| | |||||||| || || |||| ||||||||| ||||| || || | |||||| Sbjct 8312 ATTCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACC 8371 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||| |||||||||||||||||||||| |||| || || || ||| Sbjct 8372 CTCAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTG 8416 >seq121 Length=508097 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 |||| ||| | |||||||| || || |||| ||| ||||| ||||| || || | |||| Sbjct 178628 GCATTCCCCCCGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCA 178687 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||||||||||||||||||| | || || || || || Sbjct 178688 CCCTCAGCGACTACAACATCCAGAAGGAGTCGACCCTCCACCTTGT 178733 >seq112 Length=444765 Score = 82.4 bits (90), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 40809 GCAACGACTC-ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| || ||| |||| |||||| | |||| |||| |||| |||||| ||| |||||||| Sbjct 43433 GCAGCGCCTCTATCTTCGCGGGAAGACAGTTGGAGGACGGGCGCACGCTCTCCGACTACA 43374 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| ||||||||| | || || ||||| || |||| | | |||||| Sbjct 43373 ACATTCAGAAGGAGTCTACCCTTCATCTTGTCCTGCGTCTCCGTGGCGGC 43324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214202373760