Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq460 127 2e-24 seq121 84.2 2e-11 seq55 82.4 7e-11 >seq460 Length=141031 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||||| | | || | ||| | || ||||| || ||||||||||| || Sbjct 61099 ACCACCGCGTAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 61158 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| |||||||||||| || || ||| ||||||| |||||||| ||||| || Sbjct 61159 AAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 61218 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || || || | |||| |||||||| |||||| Sbjct 61219 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGAC 61278 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || |||||||||||||| || || || || ||||| Sbjct 61279 CTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 61326 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || |||||||| |||||| | || || |||||| || || || ||||| | Sbjct 61826 CTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGCTTGCCAGCAAA 61885 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||||||||||||||| || ||||| || |||||||||||| || || || || | Sbjct 61886 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTAGCCTTGACGTA 61945 Query 118667 T--TCG-ACGGT-GT-CCG-TGCTCT-CGACC-TCGACGGTCACCGTTTTGCCGGTCAGA 118718 | ||| | ||| || ||| | || ||||| ||| ||| | || ||| |||||| | Sbjct 61946 TTGTCGAATGGTCGTACCGACGAACTCCGACCGTCGTAGGTGATGGTCTTGTCGGTCAAA 62005 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || ||||| |||||||| Sbjct 62006 GTCTTGACAAAGATCTGCAT 62025 >seq121 Length=508097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||||| | ||||| |||||| ||||| Sbjct 178728 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCAAGCTG 178669 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGC 118635 || || ||| |||| ||||||||||| ||||| || |||| Sbjct 178668 CTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGAATGC 178628 >seq55 Length=161460 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| ||||| | ||||| |||||| Sbjct 8416 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTC 8357 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 |||||| || || ||| |||| || |||||||| ||||| || || Sbjct 8356 GAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGAAT 8312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826297048992