Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq460 107 2e-18 >seq460 Length=141031 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| || ||| | || || || || || |||||||| Sbjct 61135 CTCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 61194 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| |||||||| || | ||||||||||||| || || ||| || Sbjct 61195 GATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACATT 61254 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| ||| ||||| | || || |||||||| ||||||||||| || Sbjct 61255 GTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAAC 61314 Query 45325 AAAGATTTGCAT 45336 ||||||||||| Sbjct 61315 GAAGATTTGCAT 61326 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || |||||||||||||||||||| || ||| || ||| | || |||||||| Sbjct 61814 GTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTG 61873 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || || || || || | ||||| ||||| ||||| | |||||||||||| Sbjct 61874 CTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTC 61924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071463576296