Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq24 190 2e-43 seq443 129 5e-25 seq460 109 5e-19 >seq24 Length=169626 Score = 190 bits (210), Expect = 2e-43 Identities = 446/664 (67%), Gaps = 27/664 (4%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| ||||| || || || || ||||| | ||| || | ||||| Sbjct 85985 ATTTGGCAGATGTACAAGAAGGCTGAGGCTTCATTCTGGACTGCCGAGGAGATGGACCTT 86044 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||||||| | || |||| || |||| | |||| || Sbjct 86045 TCCAAGGACCTCCACGATTGGAACAACCGCCTCAACGACGATGAGCGTCATTTCATCTCG 86104 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || || |||||||| || || || || || |||||||| | ||||| | Sbjct 86105 CACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACCTTGTCGAGCGG 86164 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | || || || | | ||||| | ||||| ||||| || || | || Sbjct 86165 TTCTCCAATGAGGTCCAGGCCGCCGAGGCACGCTGCTTCTACGGCTTCCAGATCATGATG 86224 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA---CAAC 57863 || ||| | || || || | || ||||| |||||||| |||||| | ||||| ||| Sbjct 86225 GAGAACATCCACTCGGAGACATACTCGCTGCTCATCGACACGTACATCAAGGATCCCAAG 86284 Query 57864 GA-CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | || || | | || ||| |||| ||||| || || || ||| |||||||| Sbjct 86285 CAGCGCGA---GCAC-CTTTTCGACGCCATCGAGACGATTCCTTGCATCAAGAAGAAGGC 86340 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAAT 57979 || ||| | | | ||||| | || || || | ||||| ||| |||| | Sbjct 86341 GGACTGGGCTTTGCACTGGATCTCT---GACAAGGAGTCCGCCTTCGCGGAGCGGCTCGT 86397 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || ||||| || || || ||||| ||||| || || |||||| | || || ||| | Sbjct 86398 GGCTTTCGCGGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCT 86457 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| ||||||||||||||||| || ||||| ||| ||| | || ||||| ||||| Sbjct 86458 CAAGAAGCGCGGCCTGATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGA 86517 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATA----AACCGA 58155 ||| | || || || || |||||| | | | | ||| | |||| | || | Sbjct 86518 GGGCATGCACACCGACTTCGCGTGCTTGCTTTTCAGTCA---TCTCAAGAGGCGCCCCCA 86574 Query 58156 CGCGG-GATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 | ||| ||| |||| | || ||||| ||||||||||| ||||| | ||||| | Sbjct 86575 CCCGGAGAT--CATCCGTCAAATCATCACTGAGGCGGTCGCTATCGAGCAGGAGTTCTTG 86632 Query 58215 ACCG 58218 |||| Sbjct 86633 ACCG 86636 Score = 156 bits (172), Expect = 4e-33 Identities = 379/566 (67%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| || || |||| ||||| ||||||||||| || | |||| Sbjct 84522 ATATGGCAGATGTACAAGAACGCCCAAGCGTCGTTCTGGACCGTCGAGGAGATCAACCTC 84463 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 | || || || | || ||| | | | ||||| | ||| | | || || Sbjct 84462 GCCAACGACCTCATGGACTGGAACTACAAGCTCAACGCGAACGAGCGCCACTTCATCTCC 84403 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||| | || || |||||||| || || || || || ||||||||| | ||||| | Sbjct 84402 TACGTACTCGCTTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAATCTCGTCGAGCGG 84343 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | || || || | | |||||| | ||||||||||| || || | || Sbjct 84342 TTCTCTAACGAGGTACAGGCCGCCGAGGCGCGCTGCTTTTACGGCTTCCAGATCATGATC 84283 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG-- 57864 || || ||||| || || | ||| ||||| |||||||| ||||| | |||||| || Sbjct 84282 GAGAATGTGCACTCGGAGACGTACTCGCTGCTCATCGACACGTATATCAAGGACCCCGCT 84223 Query 57865 --ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCCAAGAAGG 57921 ||| | ||| |||||| |||| ||||| || || |||| | ||| ||||||| Sbjct 84222 GAACGCG---CGT-TCCTGTTCGACGCCATCGACACCAT-CCCGTGTATCCGTAAGAAGG 84168 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAATC 57980 | || ||| | | ||||| | || || || ||| || |||||||| || Sbjct 84167 CGGACTGGGCGTTGCGCTGGATTGAGGACG-AGCGTTCAGTGTTTGCGGAGAGGCTGGTC 84109 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || || ||||| || | ||||| || || || || || || || ||| || Sbjct 84108 GCATTTGCGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTTCTGGCTG 84049 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || || ||||||| || ||||||| |||||| | || || |||||| Sbjct 84048 AAGAAGCGGGGGTTGATGCCGGGGTTGACGTTCTCTAACGAGCTTATCAGCCGAGACGAG 83989 Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126 ||| | || || || |||||||| || Sbjct 83988 GGTATGCACACCGACTTTGCGTGTCT 83963 >seq443 Length=126294 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 ||||| || || | ||| ||||||||||| | || || || ||||| || |||||||| Sbjct 85492 AAAAGGTCGGGCACCCAGAGAGCGTAGAATAAGTCACGTGCACGCACTTCTTCTTTGCCA 85433 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| | || | || || || ||||| ||||||| |||||| ||| ||| Sbjct 85432 TGGTTCTTACGAAGGTCAAGGAATTCAAAGACGTCTCCATGCCATGGCTCGGCGTAGACG 85373 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 ||||| || || |||| || ||||| ||||||||||| || || || ||| || | || Sbjct 85372 GCAAAAGCTCCGGGTCGTTTGTTGCCACCCTGATCGACATAGCGAGCGGTGGCGTCGAAC 85313 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGA 23565 || | |||||||||||| | ||||| || Sbjct 85312 ACGCGTAGCATCGGCACAATGCCGTTTGA 85284 >seq460 Length=141031 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||||||||| ||||| || ||||| |||| || || |||| Sbjct 61326 ATGCAAATCTTCGTTAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCG 61267 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| || | |||||||||||| Sbjct 61266 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 61207 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| ||| | || || || | || || ||| Sbjct 61206 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTTTCGGACTACAAC 61147 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || ||||| ||||| || || ||| Sbjct 61146 ATTCAGAAGGAGTCGACCCTTCACCTCGTCCTT 61114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762076065920