Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq24 98.7 1e-15 >seq24 Length=169626 Score = 98.7 bits (108), Expect = 1e-15 Identities = 285/435 (66%), Gaps = 3/435 (1%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| ||||| ||||||||||| || || | |||||||| ||||| | Sbjct 83965 ACACGCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTCAA 84024 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| | || ||||| || ||||| || |||| ||||| || ||||| ||||| Sbjct 84025 CCCCGGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAA 84084 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCG-GCGCT-GTCATG 33757 | || || ||||| ||||| || | || ||||| || | || | |||| ||| | Sbjct 84085 CACGCCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGCAAACACTGAACGCTCGTCCTC 84144 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| ||||| || |||||||| | ||| || || || || ||||| | Sbjct 84145 AATCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGTCGATGGCGTC 84204 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || || | |||| || || | ||| || ||||| | || ||| | Sbjct 84205 GAACAGGAACGCGCGTTCAGCGGGGTCCTTGATATACGTGTCGATGAGCAGCGAGTACGT 84264 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||||| || | || || || ||||| || ||||| || || | ||||||| Sbjct 84265 CTCCGAGTGCACATTCTCGATCATGATCTGGAAGCCGTAAAAGCAGCGCGCCTCGGCGGC 84324 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || || | || || || | | ||| || ||||| || || || ||| || Sbjct 84325 CTGTACCTCGTTAGAGAACCGCTCGACGAGATTCTCGTTCACGATGCCGTCCGAGGCGGC 84384 Query 33998 AAAAAACGCCAATAC 34012 || || || | ||| Sbjct 84385 GAAGAAAGCGAGTAC 84399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811490769280