Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq24 242 5e-59 >seq24 Length=169626 Score = 242 bits (268), Expect = 5e-59 Identities = 403/575 (70%), Gaps = 13/575 (2%) Strand=Plus/Plus Query 125004 ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTC 125063 ||| |||| | | | |||||| | |||||||| |||||| |||| || || ||||| | | Sbjct 85971 ATCGGGTACCTT-AGATTTGGCAGATGTACAAGAAGGCTGAGGCTTCATTCTGGACTGCC 86029 Query 125064 GAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAG 125123 || ||| | || || ||||||||||| |||||||| | | || | | || |||| Sbjct 86030 GAGGAGATGGACCTTTCCAAGGACCTCCACGATTGGAACAACCGCCTCAACGACGATGAG 86089 Query 125124 CGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGAC 125183 || | || || |||||| | | |||||||| |||| ||| || || ||||| ||||| Sbjct 86090 CGTCATTTCATCTCGCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAG 86149 Query 125184 AATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCA--GAGGTGTCGTGCTTTTAC 125240 || || || || || ||||| | ||| | ||| || |||| ||||| ||| Sbjct 86150 AACCTTGTCGAG-CGGTTCTCCAATGAGGT--CCAGGCCGCCGAGGCACGCTGCTTCTAC 86206 Query 125241 GGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATG 125300 || ||||| |||||||| |||||| | |||||||| | ||||| || || |||| | Sbjct 86207 GGCTTCCAGATCATGATGGAGAACATCCACTCGGAGACATACTCGCTGCTCATCGACACG 86266 Query 125301 TACATTCGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCG 125357 ||||| ||||| ||| || | ||| || || |||| ||||| ||| | || Sbjct 86267 TACATCAAGGATCCCAAGCAGCGCGAGCAC---CTTTTCGACGCCATCGAGACGATTCCT 86323 Query 125358 TCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTAC 125417 | || || ||||| | |||| | | |||||| |||| | |||| | | | Sbjct 86324 TGCATCAAGAAGAAGGCGGACTGGGCTTTGCACTGGATCTCTGACAAGGAGTCCGCCTTC 86383 Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 || || | || ||||| ||||| || || ||||| |||||||| || ||| ||||| Sbjct 86384 GCGGAGCGGCTCGTGGCTTTCGCGGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCC 86443 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 ||||||| ||||||||||||||||| || |||||||| || ||| | || ||| || Sbjct 86444 TCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTCACGTTCTCCAATGAGCTT 86503 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || || || ||||||||| | ||| ||||| || Sbjct 86504 ATCTCGCGTGACGAGGGCATGCACACCGACTTCGC 86538 Score = 201 bits (222), Expect = 2e-46 Identities = 406/589 (69%), Gaps = 19/589 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| || || || || || || ||||| ||||| ||| || | || Sbjct 84522 ATATGGCAGATGTACAAGAACGCCCAAGCGTCGTTCTGGACCGTCGAGGAGATCAACCTC 84463 Query 125079 TCCAAGGACCTGTACGATTGGGAG-ACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||| ||||| || ||| | || | | || ||| ||||| | || || || Sbjct 84462 GCCAACGACCTCATGGACTGGAACTACAAGCTCAACGCGAAC-GAGCGCCACTTCATCTC 84404 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 || | | || ||||| |||| ||| || || ||||| ||||| ||||| || || | Sbjct 84403 CTACGTACTCGCTTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAATCTCGTCGAG-C 84345 Query 125197 GATTCTCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 | |||||| | ||| | || | | |||| | ||||||||||| ||||| |||||| Sbjct 84344 GGTTCTCTAACGAGGT-ACAGGCCGCCGAGGCGCGCTGCTTTTACGGCTTCCAGATCATG 84286 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || ||||| ||||||||||| | |||||| || || |||| ||| || || || Sbjct 84285 ATCGAGAATGTGCACTCGGAGACGTACTCGCTGCTCATCGACACGTATATCAAGGACCC- 84227 Query 125316 CAACG-TAAACACATGCTC---TTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 || | ||| | | || || |||| |||||||| | |||| ||| ||||| || Sbjct 84226 ---CGCTGAACGCGCGTTCCTGTTCGACGCCATCGACACCATCCCGTGTATCCGTAAGAA 84170 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| | |||| | | || ||||| || ||||| || || || || || ||||| Sbjct 84169 GGCGGACTGGGCGTTGCGCTGGATTGAGGACGAGCGTTCAGTGTTTGCGGAGAGGCTGGT 84110 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTAGTTTTGCGGCCATCTTTTGGC 125490 ||||| || || || |||||| | ||||| || |||| ||| || ||||| || |||| Sbjct 84109 CGCATTTGCGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTC-GCCGCCATTTTCTGGC 84051 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 | |||||||| || | ||||| || ||||| | ||||||| |||| ||||||| Sbjct 84050 TGAAGAAGCGGGGGTTGATGCCGGGGTTGACGTTCTCTAACGAGCTTATCAGCCGAGACG 83991 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCG 125599 |||| | ||| |||||||| ||| || || | || ||||||| Sbjct 83990 AGGGTATGCACACCGACTTTGCGTGTCTCCTCTT---CCACCATCTGCG 83945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052011725760