Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq460 82.4 6e-11 >seq460 Length=141031 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| ||||||||||| || | || || || | ||||| ||||| Sbjct 61124 TGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCG-AAAGCGTGCGGCCATCCTCGAGCTG 61182 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||| || ||| | || ||||||||| || || Sbjct 61183 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTT 61242 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | ||||| || | ||||| ||||| || ||||| || ||||| Sbjct 61243 CGCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 61302 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || ||||| Sbjct 61303 CAGAGTCTTAACGAAGATTTGCAT 61326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421247216016776