Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq119 107 3e-19 seq12 89.7 8e-14 seq20 87.8 3e-13 >seq119 Length=899948 Score = 107 bits (118), Expect = 3e-19 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 ||||| |||||||| |||||||||||||| ||||||||| ||||||| || |||| || Sbjct 427234 GCTATTCGTCGTCTAGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGCCTGATCTACGAG 427293 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| |||| || |||||||||||||| ||| ||| |||| || | || || Sbjct 427294 GAGACGCGTGGAGTCCTGAAGATCTTCCTCGAGAACGTCATCCGCGACTCCGTCACTTAC 427353 Query 16607 ACCGAGCACGCTAA 16620 || |||||||| || Sbjct 427354 ACTGAGCACGCGAA 427367 >seq12 Length=224555 Score = 89.7 bits (98), Expect = 8e-14 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || || || ||||| || ||||||||||| || |||||| |||| Sbjct 158617 AGGCATCACGAAGCCCGCCATTCGCCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTATCTC 158676 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | ||||||| |||| |||| ||| | ||||| |||||| ||| ||| Sbjct 158677 CGGGCTCATCTATGAGGAGACGCGTGGTGTGCTCAAGATTTTCCTCGAGAACGT 158730 >seq20 Length=230965 Score = 87.8 bits (96), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 || ||||||||||| ||||||||||| || || |||||| ||||||| | ||||||| Sbjct 162433 GCCATCCGTCGTCTCGCTCGTCGTGGCGGTGTGAAGCGTATCTCTGGCCTTATCTATGAG 162374 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| |||| ||| | ||||| |||||| ||| ||| Sbjct 162373 GAGACCCGTGGTGTCCTCAAGATATTCCTCGAGAACGT 162336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074490497768