Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29]
776 sequences; 33,668,918 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq119 107 3e-19
seq12 89.7 8e-14
seq20 87.8 3e-13
>seq119
Length=899948
Score = 107 bits (118), Expect = 3e-19
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546
||||| |||||||| |||||||||||||| ||||||||| ||||||| || |||| ||
Sbjct 427234 GCTATTCGTCGTCTAGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGCCTGATCTACGAG 427293
Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606
|||| |||| || |||||||||||||| ||| ||| |||| || | || ||
Sbjct 427294 GAGACGCGTGGAGTCCTGAAGATCTTCCTCGAGAACGTCATCCGCGACTCCGTCACTTAC 427353
Query 16607 ACCGAGCACGCTAA 16620
|| |||||||| ||
Sbjct 427354 ACTGAGCACGCGAA 427367
>seq12
Length=224555
Score = 89.7 bits (98), Expect = 8e-14
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
||| ||||| ||||| || || || ||||| || ||||||||||| || |||||| ||||
Sbjct 158617 AGGCATCACGAAGCCCGCCATTCGCCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTATCTC 158676
Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584
|| | ||||||| |||| |||| ||| | ||||| |||||| ||| |||
Sbjct 158677 CGGGCTCATCTATGAGGAGACGCGTGGTGTGCTCAAGATTTTCCTCGAGAACGT 158730
>seq20
Length=230965
Score = 87.8 bits (96), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546
|| ||||||||||| ||||||||||| || || |||||| ||||||| | |||||||
Sbjct 162433 GCCATCCGTCGTCTCGCTCGTCGTGGCGGTGTGAAGCGTATCTCTGGCCTTATCTATGAG 162374
Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584
|||| |||| ||| | ||||| |||||| ||| |||
Sbjct 162373 GAGACCCGTGGTGTCCTCAAGATATTCCTCGAGAACGT 162336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074490497768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |