Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq28 107 4e-18 seq105 104 5e-17 seq24 98.7 2e-15 >seq28 Length=293178 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 ||||| |||||||||||||||||||| || || | ||||| || || | || || Sbjct 204912 CTGTCTGGTGGTTGGAAGATGAAGCTCGCGCTTGCCCGCGCGATGCTCTTCAAGGCTGAC 204853 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 | || || ||||||||||| ||||||||| ||||| |||||| || ||||| | | Sbjct 204852 ATTCTTCTCCTTGATGAGCCTACCAACCACTTGGACGTTGTCAACGTCGCTTGGCTCGAG 204793 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| ||||| || ||| | || |||| ||||| |||||||| |||||| Sbjct 204792 AACTACCTCACCAGCCTCCAGACCTGCACGTCAATCATCGTCTCGCACGACTCCGGCTTC 204733 Query 279885 CT 279886 || Sbjct 204732 CT 204731 >seq105 Length=153494 Score = 104 bits (114), Expect = 5e-17 Identities = 242/364 (66%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 |||||||||| | || ||||| || ||| | |||| ||||||||| || || | Sbjct 127225 AGGTCGCTCAACTCGTCGGCTATGTGTCTGAAGTCTCTGCCTACCATCATGGCGAAGCTA 127166 Query 218717 GTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACT 218776 | || || ||||| | | | || ||||||| || |||||||||||||||||| Sbjct 127165 GCTTGATGGCGACCATTATCAACCTTGCGCAGGACTTCGTCGGCAGTAACAACATGAACC 127106 Query 218777 TGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTG 218836 |||| | || ||||||||||| ||| ||||| |||||| ||||| || | | Sbjct 127105 TGCTTATGCCGAACGGTCAGTTCGGTACTCGTGACCAGGGTGGCAAGGACCACGCCGCGG 127046 Query 218837 CCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATG 218896 | | ||||||||||| | || | ||| | | || | ||| | ||| || |||| Sbjct 127045 CTCGTTATATCTTTACCGAACTGGCACCCATCATCCGGAACGTGATGCATCCTGCGGATG 126986 Query 218897 ATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGC 218956 | | |||| | || | |||| ||||| | | |||||||||||||| ||| Sbjct 126985 ACGCTATCCTCACCTACCAGCAGGATGATGGCAGAGCCGTCGAGCCCGAGTGGTACATGC 126926 Query 218957 CTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTG 219016 | || ||| | |||| || ||||| || | || || || || || | ||| | | Sbjct 126925 CCATCATCCCGATGGTGCTTGTGAATGGCGCGGAGGGGATTGGCACCGG--TGAGTTCCG 126868 Query 219017 ACAT 219020 |||| Sbjct 126867 ACAT 126864 >seq24 Length=169626 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| || |||||||||||||| ||||| ||| Sbjct 83642 TCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATGAGGTCCATGAAGTCGAACGGGTTCGTG 83701 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||| ||||| | || || || |||| | ||||| || || ||||| | | Sbjct 83702 GCGCGGTAGTGCTTCTCGTTCCCGAGCGCGACGAGCAGACGGTCCGCTACGAACTCGATA 83761 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||||| | ||| || || | ||||||||| || Sbjct 83762 TACTGGCACATGAGGTCGGCGTTCATGCCGAT 83793 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | |||||||| ||||| ||||| || Sbjct 86859 TCGAAGAAGTTTGTCTTGCCCTGGAGCGAGATCATGTCCATGAAATCGAACGGGTTGGTC 86800 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| | ||| || ||| || || |||| | || || || || ||||| | Sbjct 86799 ACGTTGTAGTACTTCTCATCGCCGAGAGCGACGAGAAGACGATCAGCGACGAACTCGATG 86740 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||||| | ||| || | ||||||||||| || Sbjct 86739 TACTGGCACATGAGCTTCGAGTTCATGCCGAT 86708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027826580732616