Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq548 239 8e-58 seq460 140 6e-28 seq24 129 1e-24 seq28 107 4e-18 seq121 102 2e-16 seq443 96.9 6e-15 seq112 89.7 9e-13 seq55 89.7 9e-13 >seq548 Length=24274 Score = 239 bits (264), Expect = 8e-58 Identities = 359/510 (70%), Gaps = 0/510 (0%) Strand=Plus/Plus Query 268284 CATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGA 268343 |||| ||||| || ||||| ||||| | ||| |||||| | ||||| ||||||||||| Sbjct 15694 CATGTCCCCAGTCACGCTTCGCGTCAAGGTTACCGAGGTAGAGGCAAGACTGCTTGCCGA 15753 Query 268344 GCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAG 268403 | | ||| | || | || || ||||| ||||||||| ||||| | | Sbjct 15754 GAAAGATATCCGCAGCCGCACGGGAAATCTTGCGGGTGACGAACGTCCGACCACGGCGCG 15813 Query 268404 GGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGT 268463 | ||||||||||||||||||||| |||||||| ||||||| || ||||| ||||| | Sbjct 15814 GCGACTCGTGGTTGAAGAGGATGCCATTGCACGCATACATGCCGTACGCCTCGCGGTAAT 15873 Query 268464 TCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGG 268523 | ||| ||||| | | | | ||| || || |||| || || || |||| ||| | Sbjct 15874 TGACGGTGATCCAGAAGCCGTATAGCTTCGCGACACCGTATGGGGACCGCGGATAGAATG 15933 Query 268524 GCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTT 268583 ||||||| | || || | || ||| ||||| | ||||| || ||||| || | Sbjct 15934 GCGTCGTCTCGCTCTGCGGCGTCTCAACGACCTTGCCGTACAGCTCAGACGTCGACGCCT 15993 Query 268584 GGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAG 268643 |||||||| || ||||| || || | ||||| || ||||| | ||| || | Sbjct 15994 GGTAGAACCGCACGTGCTTCTCGAGCCCACACGTCCGGATCGCGTCGAGGAGACGGAGCG 16053 Query 268644 TTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGC 268703 | || | ||| || ||||| | || ||||| | ||||||||| || |||| |||||| Sbjct 16054 TGCCGAGGCCGTCGACGTCGCCGGTGTACTCGGCCATCTCGAACGAGACCTTGACATGCG 16113 Query 268704 TCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGCACGATCTTCACGAGGT 268763 ||| || |||||||| || || || ||||| |||||| | ||| | ||||||| Sbjct 16114 ACTGCGCACCCAGGTTGTAGACTTCTGTCGGTTGTACCTGCGCGATGATGTAGACGAGGT 16173 Query 268764 TCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 |||| |||| ||||||| |||||||||| Sbjct 16174 TCGTGCTGTCGCTGAGGTCGCCGTAGTGCA 16203 >seq460 Length=141031 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | ||| || || ||||| || || ||||| || || || Sbjct 61100 CCACCGCGTAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAA 61159 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | || |||||||| || Sbjct 61160 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 61219 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || ||||||||||| | || || || Sbjct 61220 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGACC 61279 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || || ||||| ||||| || ||||| Sbjct 61280 TCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 61326 Score = 102 bits (112), Expect = 2e-16 Identities = 154/212 (73%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||| ||| || || ||||||||||||||||| || | ||||| || | || Sbjct 61814 GTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTG 61873 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || ||||| | || ||||| || || || || ||||||||||| ||||| Sbjct 61874 CTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTT 61933 Query 68378 TGCCTTGACG--GCCTCG-ATGGT-GT-CTGCTGA--TTCTA-CTTCCAAGGTGATGGTT 68429 ||||||||| ||| ||||| || | | || | | | | || |||||||||| Sbjct 61934 AGCCTTGACGTATTGTCGAATGGTCGTACCGACGAACTCCGACCGTCGTAGGTGATGGTC 61993 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || | |||||||| || |||||||| Sbjct 61994 TTGTCGGTCAAAGTCTTGACAAAGATCTGCAT 62025 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||||||||| || | || | || ||||||||||| || || ||||| || || || Sbjct 62027 CCTCCGCGAAGACGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCAGAA 62086 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||||||||||||| || || | || |||||||| ||| Sbjct 62087 AGAGTGCGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 62146 Query 68355 AT 68356 || Sbjct 62147 AT 62148 >seq24 Length=169626 Score = 129 bits (142), Expect = 1e-24 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 9953 GTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCAT 10012 |||||| || || || |||||||||||||| |||||||| ||| || ||||| ||||| Sbjct 83623 GTACTCGGAGACGCGTTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATGAGGTCCAT 83682 Query 10013 GAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAATGCG 10072 |||||| || |||||| ||||| | ||||| || ||||| || || | || Sbjct 83683 GAAGTCGAACGGGTTCGTGGCGCGGTAGTGCTTCTCGTTCCCGAGCGCGACGAGCAGACG 83742 Query 10073 GTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAAT 10123 ||| || ||||||||||| ||||||| ||| ||||| | ||||||||| || Sbjct 83743 GTCCGCTACGAACTCGATATACTGGCACATGAGGTCGGCGTTCATGCCGAT 83793 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 || ||||| ||| || || || ||||| |||||||||||| | |||||||| ||| Sbjct 86892 ACACCCGCTTTCGAATAGTCGGACACCCGCTTCTCGAAGAAGTTTGTCTTGCCCTGGAGC 86833 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058 || || | |||||||| || || ||||| || | | ||| | ||||| Sbjct 86832 GAGATCATGTCCATGAAATCGAACGGGTTGGTCACGTTGTAGTACTTCTCATCGCCGAGA 86773 Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118 || || || || ||||| ||||||||||||||||||| ||| || | |||||||||| Sbjct 86772 GCGACGAGAAGACGATCAGCGACGAACTCGATGTACTGGCACATGAGCTTCGAGTTCATG 86713 Query 10119 CCAATCATGCGGCAGGGGATGGCGTC-GCAA 10148 || || | | || |||| ||||| |||| Sbjct 86712 CCGATGAGGGCACATGGGAGCGCGTCTGCAA 86682 Score = 95.1 bits (104), Expect = 2e-14 Identities = 346/538 (64%), Gaps = 19/538 (4%) Strand=Plus/Plus Query 10260 CCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTG 10319 |||||||| |||||||| | |||||| || || || || ||||| | |||||| || Sbjct 83987 CCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTCAACCCCGGCATCAACCCCCGCTTC 84046 Query 10320 CGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACCCTCCACGCACACCCAG 10379 |||||||||||||||| ||||||||||||||| | | ||||| || | | | Sbjct 84047 TTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAACACGCCCTCGACTGCCGCAAAT 84106 Query 10380 GCGACGAGGCGCTCTGCGAA---GGAGCGGTCGCGCGAAAAGTATTTCGAGGCCCACGCT 10436 ||||| || | ||| || || || || ||| | || | | | ||||| | Sbjct 84107 GCGACCAGCCTCTCCGCAAACACTGAACGCTCGTCCTCAATCCAGCGCAACGCCCAGTCC 84166 Query 10437 GCCTTCTTTCCCACGG---CA-GGGATCGTCTCGATAGCCTCGAAGAGCTTGTTACGCTC 10492 |||||||| |||| || ||||| || ||||| || ||||| | | |||| | Sbjct 84167 GCCTTCTT----ACGGATACACGGGATGGTGTCGATGGCGTCGAACA----GGAACGCGC 84218 Query 10493 GGTC----TCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCGCTGTGGACGC 10548 | || ||||| ||| | || | |||||| ||||| ||| ||| || Sbjct 84219 GTTCAGCGGGGTCCTTGATATACGTGTCGATGAGCAGCGAGTACGTCTCCGAGTGCACAT 84278 Query 10549 TCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCGTGACTTCCTCGG 10608 |||| | |||| | |||| || || ||| || | || || || | | Sbjct 84279 TCTCGATCATGATCTGGAAGCCGTAAAAGCAGCGCGCCTCGGCGGCCTGTACCTCGTTAG 84338 Query 10609 CAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGA 10668 || | | || ||||| |||| ||||| || | | || ||||| |||| | Sbjct 84339 AGAACCGCTCGACGAGATTCTCGTTCACGATGCCGTCCGAGGCGGCGAAGAAAGCGAGTA 84398 Query 10669 TGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCT 10728 || ||||||||||||||| | |||| || || | |||||| | | || | Sbjct 84399 CGTAGGAGATGAAGTGGCGCTCGTTCGCGTTGAGCTTGTAGTTCCAGTCCATGAGGTCGT 84458 Query 10729 GGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 | ||| | || |||||| ||||||||||| | || ||| |||||||||||||| Sbjct 84459 TGGCGAGGTTGATCTCCTCGACGGTCCAGAACGACGCTTGGGCGTTCTTGTACATCTG 84516 >seq28 Length=293178 Score = 107 bits (118), Expect = 4e-18 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 225845 ATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTC 225904 || ||||| | ||||| |||||| | ||||| |||| ||| ||||| | | Sbjct 205177 ATTGCACGCATGAGGGTCGACTTGCCGGTACCGTTACGACCACAGAGACCGTAGCGGTGG 205236 Query 225905 CCGCGCTTGATGTTGAGGCGC-GTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGA 225963 |||||||||| | || ||| | || ||||||||| |||||| |||| || || ||||| Sbjct 205237 CCGCGCTTGAGGC-GAAGCGTTGCGGTGTTCAGGAGAATCTTGGCACCGTACGCGAGGGA 205295 Query 225964 GAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 ||||| ||||| ||||||||||||||||||||| Sbjct 205296 GAACTGGCAATTGCACAGGTCCTCACCCTCCTC 205328 Score = 89.7 bits (98), Expect = 9e-13 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 224492 GATGAAAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATA 224551 ||||| ||| ||| | ||||||||||||| ||| |||| || |||||||||| | ||| Sbjct 203755 GATGAGAGC-CGCGA-GCGACTCGCGGTCGAGGTAGTTTGTGGGCTCATCCAAGCAGATG 203812 Query 224552 ACGTGGGGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAG 224611 ||||| |||| ||||| || ||||| | ||| | ||| |||||||| || || ||| Sbjct 203813 ACGTGAGGGCGGCGCCACGTCGCGGCACCGAGCACAACCTTGACCTTCTGGCCACCGGAG 203872 Query 224612 AGGCCGCGGAT 224622 || || || || Sbjct 203873 AGACCACGCAT 203883 >seq121 Length=508097 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| || ||||| ||||||||| ||||||||||| | || || || || Sbjct 178567 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCA 178508 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || ||||| |||||||||||||| |||||||| Sbjct 178507 AGGGTGATGGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 178464 >seq443 Length=126294 Score = 96.9 bits (106), Expect = 6e-15 Identities = 228/339 (67%), Gaps = 4/339 (1%) Strand=Plus/Minus Query 30823 AGTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACAT-T 30881 |||| ||||| |||||| || ||||||||||| | ||||| ||||| | || | Sbjct 86852 AGTAGTACATGCCCGTCTTCAGGCCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTCAGCT 86793 Query 30882 GACTTCATAGAGGGCG-CTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGG 30940 | | ||||| |||| ||| || | || ||| | ||| | |||| | || | Sbjct 86792 GGCC-CATAGTAGGCGACTG-AAGGTGGACGTTGAGCGACTGCGACTGGCAGATGAAGGC 86735 Query 30941 ACCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTA 31000 || ||||| || |||||||| | ||| ||||| ||| | |||||| |||||||||| Sbjct 86734 TCCCCGGTCAGCAGCAAGGTCGAGGACCTTCTTCTGAGAGATCTCCCAGACGGTCTTGTA 86675 Query 31001 GATTGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAAT 31060 ||| ||||| | || | |||||||| || | |||||||| || |||||| || Sbjct 86674 GATCGCCTTCACGTCGTCGGGGATGCCATCGATGCTCTGGATGGAACCGTTGTTGGCGAT 86615 Query 31061 AATCTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTA 31120 ||| |||||||||| | || ||| ||| | | | ||| || |||| ||| | Sbjct 86614 GATCATGTTCTTCATGTCGTCATTCCATAGACCAAGTTCAACGAGCTCACGCAGGAGCCA 86555 Query 31121 GTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCG 31159 | |||||| |||| || || || ||| ||||| Sbjct 86554 CGGGCAGACCACCTGGAATTCCCCGGCGAGGACACGGCG 86516 >seq112 Length=444765 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| || ||||| ||||||||| ||||||||||| | || || || || Sbjct 44272 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCAACCTCG 44331 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || || ||||| ||||| ||||| |||||||| Sbjct 44332 AGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 44375 >seq55 Length=161460 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| || ||||| || ||||| ||||| ||||| | || || || || Sbjct 8254 CCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCG 8195 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||| ||||| || |||||||||||||||||||| |||||||| Sbjct 8194 AGGGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 8151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921613460262720