Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq24 279 1e-69 seq443 123 5e-23 >seq24 Length=169626 Score = 279 bits (308), Expect = 1e-69 Identities = 461/655 (70%), Gaps = 28/655 (4%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || || || |||||||| ||||||||| |||| ||||| ||| Sbjct 84513 ATGTACAAGAACGCCCAAGCGTCGTTCTGGACCGTCGAGGAGATCAACCTCGCCAACGAC 84454 Query 42369 ACGGCCGGCTGGGAGT-CACTGTCT--GAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 | |||| | | || || | |||||| ||| || || |||| Sbjct 84453 CTCATGGACTGGAACTACAAGCTCAACGCGAACGAGCGCCACTTCATCTCCTACGTACTC 84394 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 || |||||||||||||| |||||||| || || ||||| || | | ||||| || Sbjct 84393 GCTTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAATCTCGTCGAGCGGTTCTCTAAC 84334 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||||| ||| | |||||||||||||| |||||||||||||| || ||||| ||| Sbjct 84333 GAGGTACAGGCCGCCGAGGCGCGCTGCTTTTACGGCTTCCAGATCATGATCGAGAATGTG 84274 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGT 42602 ||||| ||| |||| | ||||||| ||||||| ||| ||| |||| || || Sbjct 84273 CACTCGGAGACGTACTCG---CTGCTCATCGACACGTATATCAAGGACCCCGCTGAACG- 84218 Query 42603 AACGGG---CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 || | |||||| | ||||| || || || || || ||| ||||||||||||||| Sbjct 84217 --CGCGTTCCTGTTCGACGCCATCGACACCATCCCGTGTATCCGTAAGAAGGCGGACTGG 84160 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 ||| | |||||| ||| | | | || || ||| | ||||||||||| || ||| Sbjct 84159 GCGTTGCGCTGGATTGAG-GACGAG-CGTTCAGTGTTTGCGGAGAGGCTGGTCGCATTTG 84102 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | || ||||||||| | |||||||| || | |||||| |||| |||||||| ||| || Sbjct 84101 CGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTTCTGGCTGAAGAAGC 84042 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 || || |||||| || | || ||||| ||||| || |||||| | |||||||| ||| Sbjct 84041 GGGGGTTGATGCCGGGGTTGACGTTCTCTAACGAGCTTATCAGCCGAGACGAGGGTATGC 83982 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA---GCCCTCGAAGG 42894 | | |||||||| || ||||| ||| ||| || ||| || || | ||| Sbjct 83981 ACACCGACTTTGCGTGTCTCCTCTTC---CACCATCTGCGGCGAAAACCGCACCCGA--- 83928 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 |||| || | | |||| | || ||||| || ||||| || |||||||||||||| Sbjct 83927 AGCGCGTGCTGCGCATCGTAACTGAGGCAGTAGAGATTGAAAAGGAGTTCCTCAC 83873 Score = 273 bits (302), Expect = 4e-68 Identities = 456/651 (70%), Gaps = 30/651 (5%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || || |||||| ||||||||||| ||||| |||||||| Sbjct 85994 ATGTACAAGAAGGCTGAGGCTTCATTCTGGACTGCCGAGGAGATGGACCTTTCCAAGGAC 86053 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAAGTTT---TTCCTCAAAAACATACT 42424 | | | | ||| || | || | |||| || | ||| || || | || Sbjct 86054 -CTCCACGATTGGAACAACCGCCTCAACGACGATGAGCGTCATTTCATCTCGCACGTGCT 86112 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||||||||||||||||| |||||||| || || |||||||| | | ||||| || Sbjct 86113 CGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACCTTGTCGAGCGGTTCTCCAA 86172 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||| ||| | ||||| ||||||||||||||||||||||| || |||||| | Sbjct 86173 TGAGGTCCAGGCCGCCGAGGCACGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACAT 86232 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCG 42601 ||||| ||| ||| | ||||||| ||||||||||| ||||||| |||| Sbjct 86233 CCACTCGGAGACATACTC---GCTGCTCATCGACACGTACATCAAGGATCCCAAGCAGCG 86289 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | || ||| | ||||| |||||||| || |||||||||||||||||||||||||| Sbjct 86290 CGAGCACCTTTTCGACGCCATCGAGACGATTCCTTGCATCAAGAAGAAGGCGGACTGGGC 86349 Query 42662 GCTCAACTGGATC---GA----GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 | |||||||| || |||||| | |||| ||| |||| || || | Sbjct 86350 TTTGCACTGGATCTCTGACAAGGAGTCC-------GCCTTCGCGGAGCGGCTCGTGGCTT 86402 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | | || || ||||| ||||||||||| || |||| ||||||||||||||||||||| Sbjct 86403 TCGCGGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAAGA 86462 Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 || | ||||||||| ||||| ||||| || || || ||| | |||||||| Sbjct 86463 AGCGCGGCCTGATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGGCA 86522 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC-GAAG 42893 |||| | ||||| || ||| | || ||| || || |||| | | |||| | | Sbjct 86523 TGCACACCGACTTCGCGTGCTTGCTTTTC---AGTCATCTCAAG-AGGCGCCCCCACCCG 86578 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 ||| |||| |||||||| ||||| || | |||||| |||||||| Sbjct 86579 GAGATCATCCGTCAAATCATCACTGAGGCGGTCGCTATCGAGCAGGAGTTC 86629 >seq443 Length=126294 Score = 123 bits (136), Expect = 5e-23 Identities = 328/498 (66%), Gaps = 25/498 (5%) Strand=Plus/Minus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACG--GGGCTGCCCTCGTAGGTCGGGT 244355 ||||| | |||| | || ||| |||| | |||| |||||||||| ||| ||| || Sbjct 86300 CCCCATAGGTCATATTGGAGCTTGCCCTCG--GACGCTGGGCTGCCCTGGTACGTCTCGT 86243 Query 244356 AGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCT 244415 | || || || |||| || ||||||| | || | ||||| | ||||||||| | Sbjct 86242 AAGGGCCAAACTCCTTCGCCATCTCACAGCTCCCTTCAACAGCGGCATGGTAGATGGTTT 86183 Query 244416 CGAAGATCATCTTGTTCATGTC--GCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCAT 244473 |||||||| | |||| | | ||| |||| | || || || |||| || Sbjct 86182 CGAAGATCTGCA-GTTCGAGCCCTGCGTGCCTCGGGCGAGTCAAACGGCATGCGCAGGGC 86124 Query 244474 CATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 |||||| |||||||||| |||||||||||||| |||||||| | ||| ||| ||||||| Sbjct 86123 CATGAACGCGTCGGCCAGACCCTGCACGCCGATTCCGATGGGGCGGTGGCGCATGTTGGA 86064 Query 244534 GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGT 244593 || || || || | || || |||| ||||||| | ||| |||||| | Sbjct 86063 ACGACGCGCCTCCGGAATAGGATAGTGGTTGACGTCGATGATGCGGTTCAGGTTGAACGC 86004 Query 244594 GATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGAT 244653 || || | |||||| || | ||| || | |||| | | || |||| || Sbjct 86003 GACCACCTTGGTCACGTCGTGCAACTTCTGGAAATTGTAC---TTGCCATTCTCGATGAA 85947 Query 244654 GGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTC 244713 || || ||| |||| || || |||||||| ||| ||| || Sbjct 85946 GG--------AC-------GGGAGCGCGATAGACGCGAGATTGCAGACAGCCGTCTCATC 85902 Query 244714 CGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTG 244773 | | ||||| |||||||||||||||||| || ||||||| ||||| |||| Sbjct 85901 GGGAGACGAGTACTCGACAATCTCGGTGCAGAGATTGGACGACTTGATCGTGCCGAGGTT 85842 Query 244774 CTGGTGATTGGACTTGGC 244791 ||| || || |||||||| Sbjct 85841 CTGCTGGTTTGACTTGGC 85824 Score = 96.9 bits (106), Expect = 7e-15 Identities = 167/242 (69%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 || |||||||| | |||||| || | ||| | ||| | | | | || || |||| Sbjct 85492 AAAAGGTCGGGCACCCAGAGAGCGTAGAATAAGTCACGTGCACGCACTTCTTCTTTGCCA 85433 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 |||||| | || || | || ||||||||||| | ||||| ||||| |||||| Sbjct 85432 TGGTTCTTACGAAGGTCAAGGAATTCAAAGACGTCTCCATGCCATGGCTCGGCGTAGACG 85373 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTT 245190 || | || ||||| || |||||||| ||||| || | | | ||||| |||| Sbjct 85372 GCAAAAGCTCCGGGTCGTTTGTTGCCACCCTGATCGA----CATAGCGAGCGGTGGCGTC 85317 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGC 245250 ||| | ||| || | ||||| |||||||| |||| ||||| ||||| |||||||| Sbjct 85316 GAACACGCGTAGCATCGGCACAATGCCGTTTGAGTAACCGTTTGTGCCAGCGATGTAGGA 85257 Query 245251 GC 245252 || Sbjct 85256 GC 85255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944330039909760