Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq460 131 4e-25 seq24 102 2e-16 >seq460 Length=141031 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| ||||| |||| || || || || || || ||||| | Sbjct 61100 CCACCGCGTAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAA 61159 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||| || ||||| || ||| Sbjct 61160 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 61219 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| ||||| || || || | || ||| || || Sbjct 61220 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGACC 61279 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||||||||| ||||| || ||||| Sbjct 61280 TCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 61326 >seq24 Length=169626 Score = 102 bits (112), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190 ||||| |||||||| | | ||||| ||||| | | |||||| || || ||||| Sbjct 86687 GACGCGCTCCCATGTGCCCTCATCGGCATGAACTCGAAGCTCATGTGCCAGTACATCGAG 86746 Query 269191 TTCGTGGCTGATCGTATCTTCACG--GCACTCGGTTATGAGAAAGTGTACAATTCGAAGA 269248 ||||| ||||||||| |||| || || ||||| ||||||| ||||| || | Sbjct 86747 TTCGTCGCTGATCGT--CTTCTCGTCGCTCTCGGCGATGAGAAGTACTACAACGTGACCA 86804 Query 269249 ATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGC 269308 | || |||| || ||||| | || |||||| | || ||||| ||||||||||| |||| Sbjct 86805 ACCCGTTCGATTTCATGGACATGATCTCGCTCCAGGGCAAGACAAACTTCTTCGAGAAGC 86864 Query 269309 GTGTCAGCGACTAT 269322 | || ||||||| Sbjct 86865 GGGTGTCCGACTAT 86878 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 ||||| ||||| ||||| |||||| || |||||||| ||||| || || ||| | || Sbjct 83793 ATCGGCATGAACGCCGACCTCATGTGCCAGTATATCGAGTTCGTAGCGGACCGTCTGCTC 83734 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 || ||||| | ||||| ||| | | ||| || |||| ||| ||||| || Sbjct 83733 GTCGCGCTCGGGAACGAGAAGCACTACCGCGCCACGAACCCGTTCGACTTCATGGACCTC 83674 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTA 269321 || |||||| | || ||||| ||||||||||| || || ||| ||| || Sbjct 83673 ATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAACGCGTCTCCGAGTA 83624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179642671286128