Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq24 114 3e-20 seq105 84.2 5e-11 seq23 84.2 5e-11 >seq24 Length=169626 Score = 114 bits (126), Expect = 3e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||| | || |||||| | ||||| ||||| |||||||| ||||| | Sbjct 83797 GCTCATCGGCATGAACGCCGACCTCATGTGCCAGTATATCGAGTTCGTAGCGGACCGTCT 83738 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || ||||||| || | ||||| ||| | ||| |||||| || | ||| ||||| Sbjct 83737 GCTCGTCGCGCTCGGGAACGAGAAGCACTACCGCGCCACGAACCCGTTCGACTTCATGGA 83678 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTC 243726 ||||| ||||| || || || || ||||||||||| || || ||| Sbjct 83677 CCTCATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAACGCGTC 83632 Score = 100 bits (110), Expect = 6e-16 Identities = 135/187 (72%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 243540 TTGC-GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACA 243598 |||| ||||| | ||||| || || ||||||||||| | |||||| | ||||||| Sbjct 86682 TTGCAGACGCGCTCCCATGTGCCCTCATCGGCATGAACTCGAAGCTCATGTGCCAGTACA 86741 Query 243599 TCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCA 243658 |||| ||||| || || || || || |||| || || ||||||| |||||| | Sbjct 86742 TCGAGTTCGTCGCTGATCGTCTTCTCGTCGCTCTCGGCGATGAGAAGTACTACAACGTGA 86801 Query 243659 AGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAA 243718 ||||| || | || ||||| | || ||||| || || || || ||||||||||| | Sbjct 86802 CCAACCCGTTCGATTTCATGGACATGATCTCGCTCCAGGGCAAGACAAACTTCTTCGAGA 86861 Query 243719 AGCGTGT 243725 |||| || Sbjct 86862 AGCGGGT 86868 >seq105 Length=153494 Score = 84.2 bits (92), Expect = 5e-11 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 297430 CAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGA--A 297487 ||||| || || ||||| || || ||||| ||||| |||||||| || ||| | Sbjct 127023 CAGTTCGGTAAAGATATAACGAGCCGCGGCGTGGTCCTTGCCACCCTGG--TCACGAGTA 127080 Query 297488 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 297547 |||||||| || | ||||| | | ||| ||||| || || ||||| | ||||| ||| Sbjct 127081 CCGAACTGACCGTTCGGCATAAGCAGGTTCATGTTGTTACTGCCGACGAAGTCCTGCGCA 127140 Query 297548 AGGTTCACGATGGTCCCTTGCAGAGAT-GCTTCGCCATGGTGATAGGC 297594 ||||| | |||||| | || || | ||||||||||| || ||||| Sbjct 127141 AGGTTGATAATGGTCGCCATCA-AGCTAGCTTCGCCATGATGGTAGGC 127187 >seq23 Length=82415 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 59873 GAGGGTGCGTTGAAACTCAAAGAAATCTCGTATATTCACGCAGAGGGGTTCCTGGGAGGC 59932 ||||| ||| | || |||| || ||||||||||| ||| | ||||| |||| | ||| Sbjct 57498 GAGGGCGCGCTCAAGATCAAGGAGATCTCGTATATGCACTCGGAGGGCATCCTCGCCGGC 57557 Query 59933 GAGTTGAAACACGGTCCCCTCGCACTCCTCGACGATAAAATCCCCGTCATC 59983 ||| | |||||||| || ||||| ||| ||||||| || || || || ||| Sbjct 57558 GAGCTCAAACACGGCCCGCTCGCGCTCATCGACGAGAACATGCCGGTGATC 57608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102869034615600