Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq460 125 7e-24 >seq460 Length=141031 Score = 125 bits (138), Expect = 7e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || || |||| ||||| || || ||||||||||| || | Sbjct 61099 ACCACCGCGTAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 61158 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | ||||| |||||||||||||| || Sbjct 61159 AAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 61218 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCC 64393 || || || || || || || || ||| ||| || | || | ||| || || Sbjct 61219 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGT--CCGACGACTCG 61276 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | ||| | |||||||||||||| ||| || ||||| |||||||| Sbjct 61277 ACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 61326 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || ||||||| ||| || || || ||||||||||| || | Sbjct 62026 ACCTCCGCGAAGACGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCAGA 62085 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| ||||||||||| ||||| | || || ||||||||||||||||| Sbjct 62086 AAGAGTGCGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 62145 Query 64336 AAT 64338 ||| Sbjct 62146 AAT 62148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639953445440