Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq24 118 1e-21 seq460 96.9 3e-15 >seq24 Length=169626 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 ||||| |||||| ||| | ||||||||||| | ||||||| |||| |||||||| Sbjct 83811 GCGCTTCCGGTCTCGCTCATCGGCATGAACGCCGACCTCATGTGCCAGTATATCGAGTTC 83752 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCG 52769 || ||||| |||||| | || ||||||| | ||| ||| | ||| || ||| Sbjct 83751 GTAGCGGACCGTCTGCTCGTCGCGCTCGGGAACGAGAAGCACTACCGCGCCACGAACCCG 83692 Query 52770 TTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTC 52829 || || || ||| || ||| ||||| |||||||||||||||| |||||||| || ||| Sbjct 83691 TTCGACTTCATGGACCTCATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAACGCGTC 83632 Query 52830 GGCGAGTA 52837 |||||| Sbjct 83631 TCCGAGTA 83624 Score = 109 bits (120), Expect = 5e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 ||||||||| || || ||||||| ||||||||||||| || || |||||||| | || Sbjct 86711 GGCATGAACTCGAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCGTC 86770 Query 52731 CAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATT 52790 ||||| | ||||||| ||||| ||| ||||| || || ||| ||| || Sbjct 86771 GCTCTCGGCGATGAGAAGTACTACAACGTGACCAACCCGTTCGATTTCATGGACATGATC 86830 Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||||| |||||||||| ||||| ||||||||||| || Sbjct 86831 TCGCTCCAGGGCAAGACAAACTTCTTCGAGAAGCGGGT 86868 >seq460 Length=141031 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | || || |||||||| || || |||| Sbjct 61133 GACTCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCG 61192 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || ||||| || ||||| ||| || || | | Sbjct 61193 AAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACA 61252 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | |||||| ||||||| || | || || || |||||||| || Sbjct 61253 TTG-TCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTT 61311 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 61312 AACGAAGATTTGCAT 61326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257586254720