Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq24 140 4e-28 >seq24 Length=169626 Score = 140 bits (154), Expect = 4e-28 Identities = 343/508 (68%), Gaps = 19/508 (4%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||||||||| ||||| || ||||| ||||| ||||| ||||| || || |||||| Sbjct 86520 CCCTCGTCACGCGAGATAAGCTCATTGGAGAACGTGAGACCGGGCATCAGGCCGCGCTTC 86461 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | ||| || |||||||||||||| ||||||||| |||||| Sbjct 86460 TTGAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATACCCTCCACAGCCGCGAAA 86401 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGT-ATCAAACCACTTCATCGCCCAC 127714 || | || ||||| || |||| ||||| |||| | | ||| | || ||||| Sbjct 86400 GCCACGAGCCGCTCCGCGAAGG---CGGACTCCTTGTCAGAGATCCAGTGCAAAGCCCAG 86344 Query 127715 TGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTTC 127773 | ||||| |||| ||| || || | |||| ||| || || || || | || | | | Sbjct 86343 TCCGCCTTCTTCTTGATGCAAGGAATCGTCTCGATGGCGTCGAAAAGGTGCTCGCGCTGC 86284 Query 127774 TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCAT-TT 127832 | ||||| ||||||||| | || ||||| || ||||| || ||||| | | Sbjct 86283 T-TGGGATCCTTGATGTACGTGTCGATGAGCAGCGAGTATGTCTCCGAGTGGATGTTCTC 86225 Query 127833 CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAA 127892 ||| || | ||| | ||||||| |||| || ||| ||| ||||||| || | Sbjct 86224 CATCAT-GATCTGGAAGCCGTAGAAGCAGCGTGCCTCGGCGGCCTGGACCTCATTGG-AG 86167 Query 127893 AATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGA 127949 || | | || | ||||| || || || || || | || || || || || | Sbjct 86166 AACCG--CTCGACAAGGTTCTCGTTCACGATGCCGTCCGAGGCGGCGAAGAAGGCGAGCA 86109 Query 127950 TATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAGATCCT 128006 | | ||||| | | |||| ||||| | || | ||||| |||| ||| |||| Sbjct 86108 CGTGCGAGATGAAATGACGCTCATCGTCGTTGAGGCGGTTGTTCCAATCGTGGAGGTCCT 86049 Query 128007 TTGAGAGATCTACCTCCTCCGCAGTCCA 128034 | || || || | |||||| |||||||| Sbjct 86048 TGGAAAGGTCCATCTCCTCGGCAGTCCA 86021 Score = 84.2 bits (92), Expect = 3e-11 Identities = 167/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||||||| ||| ||| || || || ||||| || || Sbjct 83969 GCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTCAACCCC 84028 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | ||||||||||||| ||||||||| || || || || |||||||| | Sbjct 84029 GGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAACACG 84088 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGT-ATCAA 127697 ||||| || ||| || || | || | ||| ||||| | | || | || |||| Sbjct 84089 CCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGCAAA--CACTGAACGCTCGTCCTCAA 84146 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 ||| || |||||| | ||||| || |||||| |||| ||| | ||| || || | Sbjct 84147 TCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGTCGATGGCGTCGA 84206 Query 127758 AGAG 127761 | || Sbjct 84207 ACAG 84210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501248980160