Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq24 150 3e-31 >seq24 Length=169626 Score = 150 bits (166), Expect = 3e-31 Identities = 372/559 (67%), Gaps = 4/559 (1%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || || | |||||| |||||| ||||| |||||||| || ||||| | ||| ||||| Sbjct 86550 AAAAGCAAGCACGCGAAGTCGGTGTGCATGCCCTCGTCACGCGAGATAAGCTCATTGGAG 86491 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | |||| || ||||| | || ||| |||||||| || |||| ||||| | ||| Sbjct 86490 AACGTGAGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGAACCA 86431 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| |||||||| ||||| || |||||||||| ||| | || | || | Sbjct 86430 GAGAAGAAGATACCCTCCACAGCCGCGAAAGCCACGAGCCGCTCCGCGAAGGCGGACTCC 86371 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 ||||| | |||| ||||| || |||||||| |||||| || || |||| Sbjct 86370 TTGTCAGAGATCCAGTGCAAAGCCCAGTCCGCCTTCTTCTTGATGCAAGGAATCGTCTCG 86311 Query 160154 ACGGCGTTAAACAATCTG-TCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTT 160212 | ||||| || || || || ||| ||| ||||||||| || | || ||| Sbjct 86310 ATGGCGTCGAA-AAGGTGCTCGCGCTGCTTGGGATCCTTGATGTACGTGTCGATGAGCAG 86252 Query 160213 CGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGC 160272 |||||| | || | ||| | || || || ||||| ||| |||||| | || Sbjct 86251 CGAGTATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGTGC 86192 Query 160273 CTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTC 160332 ||| ||| ||||| | | ||||| | | || || | || || | ||||| Sbjct 86191 CTCGGCGGCCTGGACCTCATTGGAGAACCGCTCGACAAGGTTCTCGTTCACGATGCCGTC 86132 Query 160333 GGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCT 160392 | ||| || ||||| || | |||||| ||||||||||| | ||| || | |||||| | Sbjct 86131 CGAGGCGGCGAAGAAGGCGAGCACGTGCGAGATGAAATGACGCTCATCGTCGTTGAGGCG 86072 Query 160393 CTT-TTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAG 160451 || |||| | ||| | ||| | || | || | ||| || || |||| | || Sbjct 86071 GTTGTTCCAATCGTG-GAGGTCCTTGGAAAGGTCCATCTCCTCGGCAGTCCAGAATGAAG 86013 Query 160452 CCTGAGCAGTTTTGTACAT 160470 ||| ||| | |||||||| Sbjct 86012 CCTCAGCCTTCTTGTACAT 85994 Score = 123 bits (136), Expect = 4e-23 Identities = 313/472 (66%), Gaps = 12/472 (3%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || ||||| |||||||||||| ||||| |||||||| || ||| | |||||| || Sbjct 83957 AAGAGGAGACACGCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAG 84016 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | | |||||||| | ||| ||| || ||||| |||||||| || || | ||| Sbjct 84017 AACGTCAACCCCGGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCG 84076 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA-AGAG-GCGT 160091 || || | ||||| || |||||||| || || |||||||| |||| | | || Sbjct 84077 GAGAAGAACACGCCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGCAAACACTGAACGC 84136 Query 160092 TGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCT 160151 | ||| | |||| | ||||| || |||||||| ||| ||||| ||| | Sbjct 84137 T--CGTCCTCAATCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGT 84194 Query 160152 CGACGGCGTTAAACAATCTGTCCTGCTCCTTCA----CATCCTTGATCAGAGTAGCAATC 160207 ||| ||||| |||| | || | |||| |||||||| || | || Sbjct 84195 CGATGGCGTCGAACA----GGAACGCGCGTTCAGCGGGGTCCTTGATATACGTGTCGATG 84250 Query 160208 AGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATAT 160267 ||| ||||||| | || | ||||||||| ||||| ||||| ||| ||| || | Sbjct 84251 AGCAGCGAGTACGTCTCCGAGTGCACATTCTCGATCATGATCTGGAAGCCGTAAAAGCAG 84310 Query 160268 GTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAAC 160327 |||||| ||| ||||| | | ||||| | | ||||| | || || | Sbjct 84311 CGCGCCTCGGCGGCCTGTACCTCGTTAGAGAACCGCTCGACGAGATTCTCGTTCACGATG 84370 Query 160328 CCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGT 160379 ||||| | ||| || |||||||| | |||| |||||||| || | ||||| Sbjct 84371 CCGTCCGAGGCGGCGAAGAAAGCGAGTACGTAGGAGATGAAGTGGCGCTCGT 84422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795147486994560