Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq118 226 4e-54 seq92 140 4e-28 seq81 123 3e-23 seq548 86.0 8e-12 >seq118 Length=375891 Score = 226 bits (250), Expect = 4e-54 Identities = 263/355 (74%), Gaps = 0/355 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| ||||| || ||||| || ||||| || ||||| || Sbjct 276005 TCGAAGTCCTCACCACCAAGGTGGGTATCACCAGCGGTGGCCTTGACCTCGAAGATGCCC 275946 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | ||| ||||| || |||||||| || ||||| || ||||| ||| Sbjct 275945 TCCTCGATGGTCAGGAGCGAGACATCGAAGGTACCACCGCCGAGGTCGAAGATGAGGACG 275886 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | | ||||| ||||||||||| ||||| || || ||||| || || Sbjct 275885 TTGCGCTCGCCCTGAGCCTTCTTGTCGAGACCGTAGGCGATGGCAGCGGCCGTGGGCTCG 275826 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 ||||| |||||||| ||| || || || || || ||||||| || |||||||| ||| Sbjct 275825 TTAATGATACGAAGGACGTTGAGACCGGCGATGGTACCCGCATCCTTTGTCGCTTGACGT 275766 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 ||||| ||||| |||||||| ||||| || | || || |||| | |||||| Sbjct 275765 TGCGAGTCGTTGAAGTAGGCGGGGACGGTGATAACGGCAGAGCTGACAGTGCCACCGAGG 275706 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 || || || ||||| || ||||| || || || |||||||| |||||||| |||| Sbjct 275705 TAAGACTCGGCGATCTCCTTCATCTTCGTGAGCACCATCGAGGAAATCTCCTCAG 275651 >seq92 Length=356105 Score = 140 bits (154), Expect = 4e-28 Identities = 193/268 (72%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || ||||| ||||| | |||| ||| Sbjct 89518 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCAGTCGCCTTGACCGCGAAGACACCA 89577 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||||| | | || |||||||| ||||| || || ||||| || ||||| ||| Sbjct 89578 CCGGTGATGTTGAGGAGAGAGACATCAAAGGTACCTCCGCCAAGGTCGAAGATGAGAACG 89637 Query 7577 TTCGTATCGTCGTCTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 ||| | || || ||| | ||||||||||||||||| || || || || || | Sbjct 89638 TTCTTCTC--CGCACTTGACTGGCGGTCGAGACCGTACGCGATGGCAGCTGCGGTAGGCT 89695 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || || |||||||| | |||||||| || | | ||||| || ||||| | | Sbjct 89696 CGTTGATGATACGAAGGACCTCGAGGCCAGCGATGGAACCAGCATCCTTGGTCGCGAGAC 89755 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 | ||||||||||| ||||| || || || Sbjct 89756 GCTGCGAATCGTTGAAGTACGCAGGAAC 89783 >seq81 Length=295634 Score = 123 bits (136), Expect = 3e-23 Identities = 240/354 (68%), Gaps = 3/354 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || || |||||||| | ||| || || || ||||| || ||| || || | ||| Sbjct 151989 ATCAAAGTCCTCACCACCAAGGTGGGTGTCACCAGCGGTGGCCAAGACCTCGAAAACACC 151930 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || || | || || || || || |||||||| || || || | | | | Sbjct 151929 ATCGTCGATAGAGAGCAGGGAGACGTCGAAGGTACCACCGCCGAGATCGTAGACAATGAT 151870 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || || | | || ||| ||||||||||| ||||| |||||||| || || || Sbjct 151869 CTGCGACTCTCCACCCTT---CTTGTCGAGACCGTAGGCGATGGCCGCCGCGGTAGGCTC 151813 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || ||||| || | || || ||||| || | ||||| || ||||| || || Sbjct 151812 GTTGATGATACGGAGGACCTGGAGACCGGCAATGGTACCGGCATCCTTGGTCGCCTGACG 151753 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | |||||| || ||||| ||||| || || || |||| ||||| | |||||| Sbjct 151752 CTGAGCATCGTTGAAATAGGCAGGGACGGTAACAACGGCGTGAGTGACGGTGCGACCGAG 151693 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || || ||| | || ||||| ||| |||||||| | || ||||| || Sbjct 151692 GTAAGACTCGGCGGTCTCCTTCATCTTGCCCAGAACCATGGCGGAGATCTCCTC 151639 >seq548 Length=24274 Score = 86.0 bits (94), Expect = 8e-12 Identities = 203/307 (66%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 22444 TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAA 22503 || || ||||| || || || ||||| ||||| || || ||| || || || | || Sbjct 16000 TTCTACCAGGCGTCGACGTCTGAGCTGTACGGCAAGGTCGTTGAGACGCCGCAGAGCGAG 15941 Query 22504 AATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGATGGGATATTGGGCG 22563 | || || || || ||||| || ||||| || || || || | || | ||| Sbjct 15940 ACGACGCCATTCTATCCGCGGTCCCCATACGGTGTCGCGAAGCTATACGGCTTCTGGATC 15881 Query 22564 ACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCAC 22623 || || ||||| | || | ||||| |||| ||| |||||||| || | ||||||||| Sbjct 15880 ACCGTCAATTACCGCGAGGCGTACGGCATGTATGCGTGCAATGGCATCCTCTTCAACCAC 15821 Query 22624 GAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAAT 22683 || || ||| | || ||| | ||||| || || || || | | | | || || Sbjct 15820 GAGTCGCCGCGCCGTGGTCGGACGTTCGTCACCCGCAAGATTTCCCGTGCGGCTGCGGAT 15761 Query 22684 ATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGG 22743 ||| | || || || || | ||||| |||||||| || ||||| || || ||| Sbjct 15760 ATCTTTCTCGGCAAGCAGTCTTGCCTCTACCTCGGTAACCTTGACGCGAAGCGTGACTGG 15701 Query 22744 GGTCATG 22750 || |||| Sbjct 15700 GGACATG 15694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635126639211840