Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq24 109 6e-19 >seq24 Length=169626 Score = 109 bits (120), Expect = 6e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| || || || ||||| ||||| ||||| || || ||||| || || |||||| Sbjct 86520 CCCTCGTCACGCGAGATAAGCTCATTGGAGAACGTGAGACCGGGCATCAGGCCGCGCTTC 86461 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | | || || || ||||||||||||||||||||| ||| || Sbjct 86460 TTGAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATACCCTCCACAGCCGCGAAA 86401 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA---AACCATTTCATTGCCCAT 117468 || | || ||||| ||||||| | |||| ||||| | ||| | || ||||| Sbjct 86400 GCCACGAGCCGCTCCGCGAAGGCG---GACTCCTTGTCAGAGATCCAGTGCAAAGCCCAG 86344 Query 117469 TTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 117520 | ||||||||||| || || || | || | |||||| || || | |||| Sbjct 86343 TCCGCCTTCTTCTTGATGCAAGGAATCGTCTCGATGGCGTCGAAAAGGTGCT 86292 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | |||||| |||||| ||||| || || ||||| | || Sbjct 83969 GCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTCAACCCC 84028 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||||||||||||| ||| |||| ||| ||| |||||||||||||| | Sbjct 84029 GGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAACACG 84088 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAA 117452 ||||| || |||||| || | || | ||| || || | || | || |||| Sbjct 84089 CCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGC-AAACACTGAACGCTCGTCCTCAAT 84147 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| || ||||| | ||||||||| ||||| || | || | |||||| || || Sbjct 84148 CCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGTCGATGGCGTCGAA 84207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975077186240