Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq460 104 2e-17 >seq460 Length=141031 Score = 104 bits (114), Expect = 2e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||||||||| | || |||| || ||||| || ||||| || Sbjct 61136 TCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 61195 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || || || Sbjct 61196 ATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCAC--AT 61253 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || |||| || ||||| || || || |||||||| Sbjct 61254 --TGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTT 61311 Query 34967 CACAAAGATCTGCATA 34982 || ||||| |||||| Sbjct 61312 AACGAAGATTTGCATA 61327 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 12/208 (6%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || |||||||||||||| || || ||| | || |||| ||||| || || || Sbjct 61821 GTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGCTTGCCA 61880 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || || |||||||| | || | ||||||||||| ||||| ||| Sbjct 61881 GCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTAGCCTTG 61940 Query 34905 ACGGATGCTATCGATT-----CACCGGC---CTC--AACATCGACGGTTATGGTTTTTCC 34954 ||| || | |||| | |||| | ||| | | ||| ||| ||||| || | Sbjct 61941 ACGTAT--TGTCGAATGGTCGTACCGACGAACTCCGACCGTCGTAGGTGATGGTCTTGTC 61998 Query 34955 CGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | |||||| ||||||||||||||| Sbjct 61999 GGTCAAAGTCTTGACAAAGATCTGCATA 62026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630529777728