Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq24 244 2e-59 >seq24 Length=169626 Score = 244 bits (270), Expect = 2e-59 Identities = 393/559 (70%), Gaps = 13/559 (2%) Strand=Plus/Minus Query 48125 AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAG 48184 |||| ||| || ||||| |||||| ||| ||||| || ||| ||| | |||||||| Sbjct 86547 AGCAAGCACGCGAAGTCGGTGTGCATGCCCTCGTCACGCGAGATAAGCTCATTGGAGAAC 86488 Query 48185 CAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAG 48244 |||||| ||||| | || | || ||||||||||| || | || || || |||||| Sbjct 86487 GTGAGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGAACCAGAG 86428 Query 48245 AAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG 48304 |||||||| |||||||| |||||||| || ||||| ||| |||| | | | |||| Sbjct 86427 AAGAAGATACCCTCCACAGCCGCGAAAGCCACGAGCCGCTCCGCGAAGGCGGACTCCTTG 86368 Query 48305 TCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATG 48364 || ||||||||| | |||||||| ||||||||||||||||| || |||||||| ||| Sbjct 86367 TCAGAGATCCAGTGCAAAGCCCAGTCCGCCTTCTTCTTGATGCAAGGAATCGTCTCGATG 86308 Query 48365 GCCCGGAAGAGCTTCTTGCACTCACCTGCG-TCCGCAACATAGGT---AGTGAGCAGCTT 48420 || ||| || | || || || | || | ||| | || || |||||||| Sbjct 86307 GCGTCGAAAAGGTGCTCGCGCT-GCTTGGGATCCTTGATGTACGTGTCGATGAGCAGC-- 86251 Query 48421 TGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGC 48480 | ||| |||| ||||| | ||||| || ||||||||| ||||||||| | || Sbjct 86250 -GAGTATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGTGC 86192 Query 48481 CTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATC 48540 ||| |||| || || ||||||| | ||| | || ||||| || || || || || Sbjct 86191 CTCGGCGGCCTGGACCTCATTGGAGAACCGCTCGACAAGGTTCTCGTTCACGATGCCGTC 86132 Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC 48600 || || || |||||||| || || || | |||||| ||||| | || | |||| || Sbjct 86131 CGAGGCGGCGAAGAAGGCGAGCACGTGCGAGATGAAATGACGCTCATCGTCGTTGAG-GC 86073 Query 48601 ----ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 ||||| | || | ||| ||| ||||||| || || |||||||||| || | Sbjct 86072 GGTTGTTCCAATCGTGGAGGTCCTTGGAAAGGTCCATCTCCTCGGCAGTCCAGAATGAAG 86013 Query 48657 CGAGTGCTTTTTTGTACAT 48675 | || || |||||||| Sbjct 86012 CCTCAGCCTTCTTGTACAT 85994 Score = 214 bits (236), Expect = 3e-50 Identities = 394/571 (69%), Gaps = 15/571 (3%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | || |||||||| |||||| || ||||| |||||||| ||| |||| |||| Sbjct 83958 AGAGGAGACACGCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAGA 84017 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 | | || ||||| | ||||| || || ||||||||||| || ||||| || || | Sbjct 84018 ACGTCAACCCCGGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGG 84077 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGA---AGCGT 48299 ||||||| | |||||| |||||||| || ||| |||||||| | ||| | | || Sbjct 84078 AGAAGAACACGCCCTCGACTGCCGCAAATGCGACCAGCCTCTC-CGCAAACACTGAACG- 84135 Query 48300 TCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCT 48359 || ||| |||||| | ||||||||| |||||||| ||| || || || || | Sbjct 84136 -CTCGTCCTCAATCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGT 84194 Query 48360 CTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCA 48416 | ||||| ||| || | || ||| | | |||| | ||| || |||||| Sbjct 84195 CGATGGCGTCGAACAGGAACGCGCGTTCAGCGGGGTCCTTGATATACGTGTCGATGAGCA 84254 Query 48417 GCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCC 48476 || | |||| |||| |||||||||||||| || ||||||||| ||||| ||| | Sbjct 84255 GC---GAGTACGTCTCCGAGTGCACATTCTCGATCATGATCTGGAAGCCGTAAAAGCAGC 84311 Query 48477 TGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCC 48536 ||||| |||| || || | ||||| | ||| | |||||||| || || || | Sbjct 84312 GCGCCTCGGCGGCCTGTACCTCGTTAGAGAACCGCTCGACGAGATTCTCGTTCACGATGC 84371 Query 48537 CATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA 48596 | || || || || ||||| || || || | | ||| ||||||||||| | ||| Sbjct 84372 CGTCCGAGGCGGCGAAGAAAGCGAGTACGTAGGAGATGAAGTGGCGCTCGTTCGCGTTGA 84431 Query 48597 G--AGCA-TTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGG 48653 | | | |||||| || | ||| ||| | |||| | || || || |||||||| | Sbjct 84432 GCTTGTAGTTCCAGTCCATGAGGTCGTTGGCGAGGTTGATCTCCTCGACGGTCCAGAACG 84491 Query 48654 ACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 |||| | || || |||||||| |||||| Sbjct 84492 ACGCTTGGGCGTTCTTGTACATCTGCCATAT 84522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931523764131840