Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq24 199 7e-46 seq443 91.5 3e-13 >seq24 Length=169626 Score = 199 bits (220), Expect = 7e-46 Identities = 391/572 (68%), Gaps = 17/572 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| ||||||||||||| || ||| || |||||||| ||| ||||| | || Sbjct 84522 ATATGGCAGATGTACAAGAACGCCCAAGCGTCGTTCTGGACCGTCGAGGAGATCAACCTC 84463 Query 25537 GCCAAGGAC---ATGGACGGCTGGTAC--GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||| ||| |||||| | ||| |||| | | || ||||| || || || Sbjct 84462 GCCAACGACCTCATGGACTGGAACTACAAGCTCAACGCGAA--CGAGCGCCACTTCATCT 84405 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 ||||| | || ||||| || ||||| || || || |||||||||||||| |||| Sbjct 84404 CCTACGTACTCGCTTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAATCTCGTCGAGC 84345 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | ||| | | || || ||| || ||||| || || ||||| |||||||| | Sbjct 84344 GGTTCTCTAACGAGGTACAGGCCGCCGAGGCGCGCTGCTTTTACGGCTTCCAGATCATGA 84285 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACG 25768 |||| ||||||||||| ||| ||| | ||| || || ||||| || | ||| Sbjct 84284 TCGAGAATGTGCACTCGGAGACGTA---CTCGCTGCTCATCGACACGTATATCAAGGACC 84228 Query 25769 TCGCCGA--GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 ||| || | | | || ||||| | |||||||| ||| || | ||| | ||| Sbjct 84227 CCGCTGAACGCGCGTTC--CTGTTCGACGCCATCGACACCATCCCGTGTATCCGTAAGAA 84170 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 |||| ||||| || ||||| | | || | | ||||| ||| ||||||| Sbjct 84169 GGCGGACTGGGCGTTGCGCTGGATTGAGGACGAGCGTTCAGTGTTTGCGGAGAGGCTGGT 84110 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 || ||||| || || |||||| | || ||| ||| ||||| || ||||| |||||||| Sbjct 84109 CGCATTTGCGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTTCTGGCT 84050 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| || |||| ||||| ||| || || || |||||||| |||||| | ||||| Sbjct 84049 GAAGAAGCGGGGGTTGATGCCGGGGTTGACGTTCTCTAACGAGCTTATCAGCCGAGACGA 83990 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 |||| | |||| || ||||| || || |||| Sbjct 83989 GGGTATGCACACCGACTTTGCGTGTCTCCTCT 83958 Score = 185 bits (204), Expect = 2e-41 Identities = 385/567 (68%), Gaps = 11/567 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | ||| |||||| ||||| ||||| || || Sbjct 85985 ATTTGGCAGATGTACAAGAAGGCTGAGGCTTCATTCTGGACTGCCGAGGAGATGGACCTT 86044 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCAT--TTTC-TCAAG 25593 |||||||| | ||| ||| || | ||| ||||| ||| | |||| || | Sbjct 86045 TCCAAGGACCTCCACGATTGGAACAACCGCCTCAACGACGATGAGCGTCATTTCATCTCG 86104 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||||||||||| || |||| | Sbjct 86105 CACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACCTTGTCGAGCGG 86164 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| ||| || || ||| || ||||| || |||||||| |||||||| || Sbjct 86165 TTCTCCAATGAGGTCCAGGCCGCCGAGGCACGCTGCTTCTACGGCTTCCAGATCATGATG 86224 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| || | ||| || || |||||||| | || | Sbjct 86225 GAGAACATCCACTCGGAGACATACTC---GCTGCTCATCGACACGTACATCAAGGATCCC 86281 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 || | || | || || | ||||||||| || || ||||||||| ||||||| Sbjct 86282 AAGCAGCGCGAGCACCTTTTCGACGCCATCGAGACGATTCCTTGCATCAAGAAGAAGGCG 86341 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| || | |||||| | | || | | | | || | |||||||| || || Sbjct 86342 GACTGGGCTTTGCACTGGATCT-CTGACAAGGAGTCCGCCTTCGCGGAGCGGCTCGTGGC 86400 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 || || ||||||||||| ||||| ||| ||||| ||||| |||||||||||||||| Sbjct 86401 TTTCGCGGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAA 86460 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||||| || || ||||| ||||| ||| | |||||||| Sbjct 86461 GAAGCGCGGCCTGATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGG 86520 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCT 26036 | |||| || || || ||| |||| Sbjct 86521 CATGCACACCGACTTCGCGTGCTTGCT 86547 >seq443 Length=126294 Score = 91.5 bits (100), Expect = 3e-13 Identities = 168/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGT 221481 || || ||||||||||| || |||||| | | ||| | | |||||||| || Sbjct 86201 GCGGCATGGTAGATGGTTTCGAAGATCTGCAGTTCGAGCCCTGCGTGCCTCGGGCGAGTC 86142 Query 221482 GAAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGG 221540 || ||||| ||||| | |||| | |||||||||| ||||| || ||||| ||||||| Sbjct 86141 AAACGGCATGCGCAGGGCCATGAACG-CGTCGGCCAGACCCTGCACGCCGATTCCGATGG 86083 Query 221541 GCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACGTCGATC 221599 | | ||| | | |||||||| || | ||| || || | ||||| |||||||||||| Sbjct 86082 GGCGGTGGCGCATGTTGGAA-CGACGCGCCTCCGGAATAGGATAGTGGTTGACGTCGATG 86024 Query 221600 AGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAAC 221659 | ||| ||||| | | || || || ||| ||| || ||||||| |||| || Sbjct 86023 ATGCGGTTCAGGTTGAACGCGACCACCTTGGTCACGTCGTGCAACTTCTGGAAATTGTAC 85964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928835790205440