Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq24 109 7e-19 >seq24 Length=169626 Score = 109 bits (120), Expect = 7e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 64982 AGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAA 65041 |||| | || || |||||| | || | || || || ||||||||||| | ||||| Sbjct 86292 AGCACCTTTTCGACGCCATCGAGACGATTCCTTGCATCAAGAAGAAGGCGGACTGGGCTT 86351 Query 65042 TGAAATGGTT---TGACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGT 65098 || | ||| | ||||| |||| | ||||||| ||||| || | || || ||| Sbjct 86352 TGCACTGGATCTCTGACAAGGAGTC---CGCCTTCGCGGAGCGGCTCGTGGCTTTCGCGG 86408 Query 65099 GTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGG 65158 ||||||||||||||||||||| || || || | | || | ||| | |||||||| | Sbjct 86409 CTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGCG 86468 Query 65159 GTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210 | || ||||| || || ||||| ||||| ||||| || || || ||||| Sbjct 86469 GCCTGATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGG 86520 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 64990 TTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGG 65049 || || |||||| | || | || ||||| ||||||||| | ||||| || ||| Sbjct 84207 TTCGACGCCATCGACACCATCCCGTGTATCCGTAAGAAGGCGGACTGGGCGTTGCGCTGG 84148 Query 65050 TTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGG 65108 |||| || | || | || || ||| | || | || |||||| || ||||| Sbjct 84147 ATTGAGGACGAGCGTTCAGTGTTT-GCGGAGAGGCTGGTCGCATTTGCGGCAGTCGAGGG 84089 Query 65109 TATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCC 65168 | |||||||||||||| ||| ||| |||| ||| ||||||||||||| | ||||| Sbjct 84088 CGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGGTTGATGCC 84029 Query 65169 AGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || | ||||| || || ||||| |||||| |||||| | ||| || ||||| Sbjct 84028 GGGGTTGACGTTCTCTAACGAGCTTATCAGCCGAGACGAGGGTATGCACACCGACTTTGC 83969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563813274880