Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq24 181 2e-39 seq443 105 1e-16 seq274 87.8 3e-11 >seq24 Length=169626 Score = 181 bits (200), Expect = 2e-39 Identities = 227/303 (75%), Gaps = 25/303 (8%) Strand=Plus/Minus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG---CACAGAAACTGCCCGA 794432 ||| |||||||| |||||||||||||||||||| ||||||| || || ||| | || Sbjct 86485 GAGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGAAC---CAGA 86429 Query 794433 GAAAAAGATGCCCTCGACGGCGGC-AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGC 794491 ||| ||||| ||||| || || || |||||| ||||||||||| || || | | | Sbjct 86428 GAAGAAGATACCCTCCACAGCCGCGAAAGCC-ACGAGCCGCTCCGCGAAGGCGGAC---- 86374 Query 794492 CCTCTTTGTT---GATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCG 794548 || |||| |||||| | || ||||| || ||||| ||| | | | || | || Sbjct 86373 --TCCTTGTCAGAGATCCAGTGCAAAGCCCAGTCCGCCTTCTTCTTGATGCAAGGAATCG 86316 Query 794549 TGTCGATGGCG-CGAAAGAGGTGGTC---CTTCTCGACCGGGTCCTTGACGTAGGTGTCG 794604 | ||||||||| ||||| ||||| || || || | || ||||||| ||| |||||| Sbjct 86315 TCTCGATGGCGTCGAAA-AGGTGCTCGCGCTGCTTG---GGATCCTTGATGTACGTGTCG 86260 Query 794605 ATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 ||||| |||||||| ||||| ||||||||||| || || |||||||||||| || ||| Sbjct 86259 ATGAGCAGCGAGTATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAG 86200 Query 794665 CAG 794667 ||| Sbjct 86199 CAG 86197 Score = 168 bits (186), Expect = 1e-35 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 793896 CCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAG 793955 || ||| | || |||||| ||||| |||||| |||||||||||||||| ||||||| Sbjct 83612 CCGGCCATTGCGTACTCGGAGACGCGTTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAG 83671 Query 793956 ATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGAC 794015 || | ||||| | ||||||||| | | |||||||||||||| |||||||| Sbjct 83672 ATGAGGTCCATGAAGTCGAACGGGTTCGTGGCGCGGTAGTGCTTCTCGTTCCCGAGCGCG 83731 Query 794016 GCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCG 794075 | ||||| ||||| || ||||| || || ||||||||||||||| |||||||||||||| Sbjct 83732 ACGAGCAGACGGTCCGCTACGAACTCGATATACTGGCACATGAGGTCGGCGTTCATGCCG 83791 Query 794076 ATGAGCGCCACGGGCAGCGACTC 794098 ||||||| || || |||| ||| Sbjct 83792 ATGAGCGAGACCGGAAGCGCCTC 83814 Score = 132 bits (146), Expect = 8e-25 Identities = 155/205 (76%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || ||||| || | ||| ||| ||| ||| |||||| ||||| |||||||||| |||| Sbjct 86892 ACACCCGCTTTCGAATAGTCGGACACCCGCTTCTCGAAGAAGTTTGTCTTGCCCTGGAGC 86833 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG- 794011 ||||||| ||||| | ||||||||||| | ||||| |||||| ||||| Sbjct 86832 GAGATCATGTCCATGAAATCGAACGGGTTGGTCACGTTGTAGTACTTCTCATCGCCGAGA 86773 Query 794012 -CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 ||||| || || || || |||||||| || ||||||||||||||||| | ||||| Sbjct 86772 GCGACG--AGAAGACGATCAGCGACGAACTCGATGTACTGGCACATGAGCTTCGAGTTCA 86715 Query 794071 TGCCGATGAGCGC-CACGGGCAGCG 794094 |||||||||| || || ||| |||| Sbjct 86714 TGCCGATGAGGGCACATGGG-AGCG 86691 Score = 129 bits (142), Expect = 9e-24 Identities = 203/289 (70%), Gaps = 5/289 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | || |||||||| ||||| || ||||| ||| || ||||| || Sbjct 84026 CCCGGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAAC 84085 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAA-AGTGTCCAGGCCCTCTTT 794498 | ||||||||| || ||||| |||| |||| ||| ||||| | || | ||| | Sbjct 84086 ACGCCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGCAAACACTGAACG----CTCGTC 84141 Query 794499 GTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC 794558 | ||||| || |||||| || ||||| || | | | || | ||||||||||| Sbjct 84142 CTCAATCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGTCGATGGC 84201 Query 794559 GCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 794618 | || ||| | || | |||||||||| || ||||||||||| |||||||| Sbjct 84202 GTCGAACAGGAACGCGCGTTCAGCGGGGTCCTTGATATACGTGTCGATGAGCAGCGAGTA 84261 Query 794619 GGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||| ||||| | || ||||| |||||||||||| ||||||||| Sbjct 84262 CGTCTCCGAGTGCACATTCTCGATCATGATCTGGAAGCCGTAAAAGCAG 84310 Score = 122 bits (134), Expect = 1e-21 Identities = 157/213 (74%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| || ||| || || | |||||||| |||||||||| Sbjct 86193 GCCTCGGCGGCCTGGACCTCATTGGAGAACCGCTCGACAAGGTTCTCGTTCACGATGCCG 86134 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-G 796268 || ||||||||| |||||||| |||||| ||| || |||||||| |||||| ||| | Sbjct 86133 TCCGAGGCGGCGAAGAAGGCGAGCACGTGCGAGATGAAATGACGCTCATCGTCGTTGAGG 86074 Query 796269 CG--AGACCCA---GTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAG 796323 || | ||| ||||| ||| | ||||| | ||||||||| ||||| || Sbjct 86073 CGGTTGTTCCAATCGTGGA---GGTCCTTGGAAAGGTCCATCTCCTCGGCAGTCCAGAAT 86017 Query 796324 GAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 || ||||| ||||| |||||||||| ||| ||| Sbjct 86016 GAAGCCTCAGCCTTCTTGTACATCTGCCAAATC 85984 Score = 107 bits (118), Expect = 3e-17 Identities = 150/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | || ||||| || ||| || || | || ||||| |||||||||| Sbjct 84314 GCCTCGGCGGCCTGTACCTCGTTAGAGAACCGCTCGACGAGATTCTCGTTCACGATGCCG 84373 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| || ||||| |||| ||| ||||| ||||||| || ||||| Sbjct 84374 TCCGAGGCGGCGAAGAAAGCGAGTACGTAGGAGATGAAGTGGCGCTCGTTCGCGTTGAGC 84433 Query 796270 ---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 || ||||| | |||| | |||||| || ||||||| ||||||| || || Sbjct 84434 TTGTAGTTCCAGTCCATGAGGTCGTTGGCGAGGTTGATCTCCTCGACGGTCCAGAACGAC 84493 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATC 796356 || | ||| || |||||||||| ||||||| Sbjct 84494 GCTTGGGCGTTCTTGTACATCTGCCATATC 84523 >seq443 Length=126294 Score = 105 bits (116), Expect = 1e-16 Identities = 145/198 (73%), Gaps = 11/198 (6%) Strand=Plus/Minus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGCGGTTGAGGCGACGCGCGCC---GGCGCTC 2070108 || ||||||||||| || || ||||| ||| ||| || ||| ||| |||| Sbjct 86201 GCGGCATGGTAGATGGTTTCGAAGAT-CTGCAGTTCGAGCCCTGCGTGCCTCGGGCG-AG 86144 Query 2070109 TCCCACGGCAGGTCCA---TCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCC 2070165 || |||||| | || |||| |||||||||||||| ||||||||||||| || Sbjct 86143 TCAAACGGCATGCGCAGGGCCATG---AACGCGTCGGCCAGACCCTGCACGCCGATTCCG 86087 Query 2070166 ATCGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCG 2070225 || || |||||||||| ||| || | || ||||| || | || |||||||||| |||| Sbjct 86086 ATGGGGCGGTGGCGCATGTTGGAACGACGCGCCTCCGGAATAGGATAGTGGTTGACGTCG 86027 Query 2070226 ATCACGCGGTTGAGGTTG 2070243 || | |||||| |||||| Sbjct 86026 ATGATGCGGTTCAGGTTG 86009 >seq274 Length=162771 Score = 87.8 bits (96), Expect = 3e-11 Identities = 135/189 (71%), Gaps = 9/189 (5%) Strand=Plus/Minus Query 653618 GTCAAGATCGTCACCCGCGCCATGCGCCAGCCCGAGGTGGGCGACAAACTGTCGTCGCGC 653677 ||||||||| | |||| ||| ||| || || | |||||||| | | ||||| Sbjct 148900 GTCAAGATCCGCGTCCGCTCCACGCGTATACCACAGATCGGCGACAAGTTCGCTTCGCGT 148841 Query 653678 CACGGGCAAAAGGGCACCGTGGG---CAGCGTGCGCTCGACCGAGGAAATGCCGTGGTCG 653734 ||||| || ||||| ||| | || || | ||| | ||||| ||||||| || Sbjct 148840 CACGGTCAGAAGGGTACCATCGGTATCACCTACCGCCAG---GAGGACATGCCGT--TCA 148786 Query 653735 CCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCACGCCATCCCGTCGCGCATG 653794 | ||| | |||| ||||||||||||| |||||||||| |||||||| || || || ||| Sbjct 148785 CGGCG-GAGGGCATCACGCCCGACATCATCATCAACCCCCACGCCATTCCCTCTCGTATG 148727 Query 653795 ACCATGGGC 653803 || || ||| Sbjct 148726 ACAATCGGC 148718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916163853340664