Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq460 93.3 8e-14 >seq460 Length=141031 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/212 (71%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| ||||| || ||||| || |||||||| || || | | ||| || || ||||| Sbjct 61814 GTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTG 61873 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||||| || | || || || ||||| || || ||||| ||||| ||||| Sbjct 61874 CTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTT 61933 Query 82727 TGCTTTTAC--ATTTTCAA----TCGTATC-ATTAGGTTCTA-CTTCCAAAGTTATCGTC 82778 || || || ||| || | ||||| | | | | | | | || | || || ||| Sbjct 61934 AGCCTTGACGTATTGTCGAATGGTCGTACCGACGAACTCCGACCGTCGTAGGTGATGGTC 61993 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | ||||| ||||| ||||| |||||||| Sbjct 61994 TTGTCGGTCAAAGTCTTGACAAAGATCTGCAT 62025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981817438183064