Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq24 264 2e-64 seq336 95.1 2e-13 seq443 87.8 3e-11 >seq24 Length=169626 Score = 264 bits (292), Expect = 2e-64 Identities = 378/516 (73%), Gaps = 30/516 (6%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| ||||| || || ||||| ||||||||| | |||| Sbjct 85984 GATTTGGCAGATGTAC-AAGAAGGCTGAGGCTTCATTCTGGACTGCCGAGGAGATGGACC 86042 Query 1455835 TCGGCGCCGACACGGTCCAC---TGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCA 1455888 | | ||| ||||| ||| ||| | | |||||| ||||| ||||||| Sbjct 86043 TTTCCAAGGACC---TCCACGATTGGAACAACCGCCTCAACGACGATGAGCGTCATTTCA 86099 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || |||||| |||||||| || ||||||| || ||||||||| ||||||||| | | Sbjct 86100 TCTCGCACGTGCTCGCCTTCTT-CGCCGCCTCGGACGGCATCGTGAACGAGAACCTTGTC 86158 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || || |||||||| | |||||||| | || ||||| ||||||||| Sbjct 86159 GAGCGGTTCTCCAATGAGGTCCAGGCCGCCGAGGCACGCTGCTTCTACGGCTTCCAGATC 86218 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || || |||||||| || |||||||| ||| ||||||| Sbjct 86219 ATGATGGAGAACATCCACTCGGAGACATACTCGCTGCTCATCGACACGTACATCAAGGAT 86278 Query 1456069 CCGGTCGAGAAG---GACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAA 1456124 || | || || || ||||| ||||| ||||||||| ||| | || | | | ||| Sbjct 86279 CC---CAAGCAGCGCGAGCACCT-TTTCGACGCCATCGAGACGATTCCTTGCATCAAGAA 86334 Query 1456125 AAAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 ||||| |||||||| || | |||||| ||||||| | || | ||| || ||| Sbjct 86335 GAAGGCGGACTGGGCTTTGCACTGGATCTCTGACAAGGA-GTCCGC----CTTCGCGGAG 86389 Query 1456182 CGGCTCGTCGGCTTT-GCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 |||||||| |||||| || || || ||||| ||||| ||||| || || | |||| Sbjct 86390 CGGCTCGT-GGCTTTCGCGGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCAT 86448 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||||||||| ||||||||||| Sbjct 86449 CTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCT 86484 Score = 196 bits (216), Expect = 7e-44 Identities = 348/502 (69%), Gaps = 8/502 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| | |||||| || || ||| | || || || ||||||| ||||||| || ||| Sbjct 84523 GATATGGCAGATGTAC-AAGAACGCCCAAGCGTCGTTCTGGACCGTCGAGGAGATCAACC 84465 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 ||| | |||| | ||||| | ||| | || |||||||||| |||||| Sbjct 84464 TCGCCAACGACCTCATGGACTGGAACTACAAGCTCAACGCGAACGAGCGCCACTTCATCT 84405 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||| ||||| ||| ||||||||| || ||||||||| |||||| || | || Sbjct 84404 CCTACGTACTCGC-TTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAATCTCGTCGAG 84346 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || || ||||| || | ||||| || | |||||||| ||||||||| Sbjct 84345 CGGTTCTCTAACGAGGTACAGGCCGCCGAGGCGCGCTGCTTTTACGGCTTCCAGATCATG 84286 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 ||||| || | ||||| || || |||||||| || |||||||| || |||||||||| Sbjct 84285 ATCGAGAATGTGCACTCGGAGACGTACTCGCTGCTCATCGACACGTATATCAAGGACCCC 84226 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | || | ||| || |||||||||||| | |||| | | || ||||| Sbjct 84225 GCTGAACGCGCGTTCCTGTTCGACGCCATCGACACCATCCCGTGTATCCGTAAGAAGGCG 84166 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 ||||||||| || ||||| | | || || | | ||||| ||| |||| |||| Sbjct 84165 GACTGGGCGTTGCGCTGGATTGAGGACGA--GCGTTCAGTGTTTGCGGAGAGGCTGGTCG 84108 Query 1456192 GCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| || ||||||||| | || ||||| || ||| |||||| || ||||| | Sbjct 84107 CATTTGCGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTTCTGGCTGA 84048 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 ||||||| || | ||||| || Sbjct 84047 AGAAGCGGGGGTTGATGCCGGG 84026 Score = 159 bits (176), Expect = 5e-33 Identities = 162/206 (79%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 1456565 GAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGA 1456624 ||| |||| ||||| |||||||||||||||||||| | |||||||||||||| || || Sbjct 83814 GAGGCGCTTCCGGTCTCGCTCATCGGCATGAACGCCGAC-CTCATGTGCCAGTATATCGA 83756 Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 || || || ||||| ||||||| |||||||| || ||||||||||||| | | Sbjct 83755 GTTC-GTAGCGGACCGTCTGCTCGTCGCGCTCGGGAACG-AGAAGCACTACCGCGCCACG 83698 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGC 1456744 ||||||||| | ||||| | ||||||||| |||||||||||||||| |||||| Sbjct 83697 AACCCGTTCGACTTCATGGACCTCATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAA 83638 Query 1456745 CGCGT-GGCGAGTACGCCAAGGCCGG 1456769 ||||| ||||||||| | |||||| Sbjct 83637 CGCGTCTCCGAGTACGCAATGGCCGG 83612 Score = 120 bits (132), Expect = 4e-21 Identities = 126/162 (78%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 || ||||||||||||||| | | |||||||||||||||||| || || ||||| || | Sbjct 86702 GCCCTCATCGGCATGAACTCGAA-GCTCATGTGCCAGTACATCGAGTTC-GTCGCTGATC 86759 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 | || |||| || |||||| | |||||| ||||| | ||||||||||| | Sbjct 86760 GTCTTCTCGTCGCTCTCGGC-GATGAGAAGTACTACAACGTGACCAACCCGTTCGATTTC 86818 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||| ||||||||||| |||||||||| ||||| |||||| Sbjct 86819 ATGGACATGATCTCGCTCCAGGGCAAGACAAACTTCTTCGAG 86860 >seq336 Length=94316 Score = 95.1 bits (104), Expect = 2e-13 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || |||||||| ||||||| ||| ||||||| |||||||| ||| ||||||||||| Sbjct 85861 GCGGACCTGGTATCGTGGGGTGCCATCGGTGCACGCACCACGGAGTCACAGGTGCACCGT 85920 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAAC 165851 ||| | | ||| |||||| | |||||| |||||||||||| Sbjct 85921 GAGCTCGTGTCTGCGCTGTCAATGCCCACCGGCTTCAAAAAC 85962 >seq443 Length=126294 Score = 87.8 bits (96), Expect = 3e-11 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 |||||| ||| || |||||| || ||||||| || || || |||||||| || | Sbjct 85007 ATGTCGGAGCGGTACTTCACCCATGCATCGCCCACCCTTTTCAACGCCGGCACTCCCAAC 85066 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 || ||| || |||||||| || |||||||| ||| || |||||||||||||| Sbjct 85067 CCCCAGCTGAGTTCATGCTTTCTTGTGTGCATGAAGGACGACTCCATCGAGGGCATCTAC 85126 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGT 260065 || |||||| | || ||| | ||| ||| | |||||||| || ||| Sbjct 85127 TCGACTCTCAAGGATTGTGCGATGATCAGCAAAACCGCCGGCGGTATTGGT 85177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177736353373712