Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq24 140 4e-28 >seq24 Length=169626 Score = 140 bits (154), Expect = 4e-28 Identities = 343/508 (68%), Gaps = 19/508 (4%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||||||||| ||||| || ||||| ||||| ||||| ||||| || || |||||| Sbjct 86520 CCCTCGTCACGCGAGATAAGCTCATTGGAGAACGTGAGACCGGGCATCAGGCCGCGCTTC 86461 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | ||| || |||||||||||||| ||||||||| |||||| Sbjct 86460 TTGAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATACCCTCCACAGCCGCGAAA 86401 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGT-ATCAAACCACTTCATCGCCCAC 130210 || | ||| ||||| || |||| ||||| |||| | | ||| | || ||||| Sbjct 86400 GCCACGAGCCGCTCCGCGAAGG---CGGACTCCTTGTCAGAGATCCAGTGCAAAGCCCAG 86344 Query 130211 TGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTTC 130269 | |||||| |||| ||| || || | |||| ||| || || || || | || | | | Sbjct 86343 TCCGCCTTCTTCTTGATGCAAGGAATCGTCTCGATGGCGTCGAAAAGGTGCTCGCGCTGC 86284 Query 130270 TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCAT-TT 130328 | ||||| ||||||||| | || ||||| || ||||| || |||| | | Sbjct 86283 T-TGGGATCCTTGATGTACGTGTCGATGAGCAGCGAGTATGTCTCCGAGTGGATGTTCTC 86225 Query 130329 CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCAA 130388 ||| || | ||| | ||||||| |||| || ||| ||| ||||||| || | Sbjct 86224 CATCAT-GATCTGGAAGCCGTAGAAGCAGCGTGCCTCGGCGGCCTGGACCTCAT-TGGAG 86167 Query 130389 AATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGA 130445 || | | || | ||||| || || || || || | || || || || || | Sbjct 86166 AACCG--CTCGACAAGGTTCTCGTTCACGATGCCGTCCGAGGCGGCGAAGAAGGCGAGCA 86109 Query 130446 TATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGATCCT 130502 | | ||||| | | |||| ||||| | || | ||||| |||| || |||| Sbjct 86108 CGTGCGAGATGAAATGACGCTCATCGTCGTTGAGGCGGTTGTTCCAATCGTGGAGGTCCT 86049 Query 130503 TCGAGAGATCTACCTCCTCCGCAGTCCA 130530 | || || || | |||||| |||||||| Sbjct 86048 TGGAAAGGTCCATCTCCTCGGCAGTCCA 86021 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||||||||| ||| ||| || || || ||||| || || Sbjct 83969 GCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTCAACCCC 84028 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | ||||||||||||| ||||||||| || || || || |||||||| | Sbjct 84029 GGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAACACG 84088 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGT-ATCAA 130193 ||||| || ||| || || | || | ||| ||||| | | || | || |||| Sbjct 84089 CCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGCAAA--CACTGAACGCTCGTCCTCAA 84146 Query 130194 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 130253 ||| || |||||| | |||||| || ||||||||||| ||| | ||| || || | Sbjct 84147 TCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGTCGATGGCGTCGA 84206 Query 130254 AGAG 130257 | || Sbjct 84207 ACAG 84210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429201178560