Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq24 161 1e-34 >seq24 Length=169626 Score = 161 bits (178), Expect = 1e-34 Identities = 212/288 (74%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 94656 GGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGA---AGCA 94712 |||||||||| ||||| |||| ||| || |||||| | || || |||| Sbjct 86239 GGAGACATACTCGCTGCTCATCGACACGTACATCAAGGATC---CCAAGCAGCGCGAGCA 86295 Query 94713 GCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAA 94772 || || || |||||| | || |||| || || | ||||| ||||| |||||| || | Sbjct 86296 CCTTTTCGACGCCATCGAGACGATTCCTTGCATCAAGAAGAAGGCGGACTGGGCTTTGCA 86355 Query 94773 GTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGT 94829 ||| | | |||| |||| || |||| || ||||| ||| | || || ||| ||| Sbjct 86356 CTGGATCTCTGACAAGGAGTC-CG--CCTTCGCGGAGCGGCTCGTGGCTTTCGCGGCTGT 86412 Query 94830 TGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCT 94889 |||||||||||||||||||||||||| | | || | |||||||||||||| || || Sbjct 86413 GGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCT 86472 Query 94890 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||| |||||| |||||||| ||||||||||| ||||||||||| Sbjct 86473 GATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGG 86520 Score = 109 bits (120), Expect = 6e-19 Identities = 199/289 (69%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| |||||| ||||| ||||| | || || || |||||| | Sbjct 84252 CTCATCGACACGTATATCAAGGACCCCGCTGAACGCGCGTTCCTGTTCGACGCCATCGAC 84193 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 94790 || | |||||||| | ||||| ||||| ||||| || ||| |||| || | Sbjct 84192 ACCATCCCGTGTATCCGTAAGAAGGCGGACTGGGCGTTGCGCTGGATTGAGGACGA---- 84137 Query 94791 GCGTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 |||||| ||||| ||| | || ||||||||||| || ||||| | |||||||| Sbjct 84136 GCGTTCAGTGTTTGCGGAGAGGCTGGTCGCATTTGCGGCAGTCGAGGGCGTGTTCTTCTC 84077 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || ||| ||| |||| ||||| |||||||| || | ||||| || | || Sbjct 84076 CGGGTCGTTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGGTTGATGCCGGGGTTGACGTT 84017 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||| |||||||||||| || |||||||| | ||| || |||||| Sbjct 84016 CTCTAACGAGCTTATCAGCCGAGACGAGGGTATGCACACCGACTTTGCG 83968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255142370240