Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq118 118 3e-21 seq460 96.9 1e-14 >seq118 Length=375891 Score = 118 bits (130), Expect = 3e-21 Identities = 263/395 (67%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || || || ||||| || ||||| | || |||||||| || || || | || | Sbjct 275650 CCTGAGGAGATTTCCTCGATGGTGCTCACGAAGATGAAGGAGATCGCCGAGTCTTACCTC 275709 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | ||| ||||| || || || ||||| || || || | || ||| Sbjct 275710 GGTGGCACTGTCAGCTCTGCCGTTATCACCGTCCCCGCCTACTTCAACGACTCGCAACGT 275769 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || ||||| ||||| || | ||| || || | || || || | || ||||| || Sbjct 275770 CAAGCGACAAAGGATGCGGGTACCATCGCCGGTCTCAACGTCCTTCGTATCATTAACGAG 275829 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || || || || || || || || | | | | || || | Sbjct 275830 CCCACGGCCGCTGCCATCGCCTACGGTCTCGACAAGAAGGCTCAGGGCGAGCGCAACGTC 275889 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || || | || |||||||| || ||||| || || || || | || ||||| Sbjct 275890 CTCATCTTCGACCTCGGCGGTGGTACCTTCGATGTCTCGCTCCTGACCATCGAGGAGGGC 275949 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || ||||||||||| || |||||||| || || || || || Sbjct 275950 ATCTTCGAGGTCAAGGCCACCGCTGGTGATACCCACCTTGGTGGTGAGGACTTCGACAAC 276009 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCG 349926 || ||||| || || || || || || ||||| Sbjct 276010 CGACTCGTCAACCACTTCGTCAACGAGTTCAAGCG 276044 >seq460 Length=141031 Score = 96.9 bits (106), Expect = 1e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 || || ||||| ||| || ||||| |||||||| || | || || ||||| || ||| Sbjct 61812 AGGTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGT 61871 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || ||||||||||| ||||| ||||| |||||||| || || || || || || || Sbjct 61872 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATC 61931 Query 140652 TTAGCTTTTAC 140662 ||||| || || Sbjct 61932 TTAGCCTTGAC 61942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515239334583128