Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq443 192 6e-44 seq24 176 5e-39 >seq443 Length=126294 Score = 192 bits (212), Expect = 6e-44 Identities = 417/620 (67%), Gaps = 17/620 (3%) Strand=Plus/Minus Query 78547 GTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATG 78606 ||||| |||||||| |||||||| || | |||||| ||||||||||| ||||| Sbjct 86447 GTGTAGGGCTCGAAGCATTCGTTGTTGCCGAGGATCTGACTCGTCGAGGCGGTAGGCATC 86388 Query 78607 GGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCC---- 78662 || ||||| || || || ||||||||||| | | || || |||| | || Sbjct 86387 GGAGCGACAAGCAGGGAGTTCCGAAGACCGTACTGTGCGACCTTTGCCTTCAAGCTCGCC 86328 Query 78663 --GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGAC 78720 |||||| | || | | | ||||||||| | ||| ||| || | ||||||||| Sbjct 86327 CAGTCCCATAGATCGGTAGGAGTGATCCCCCATAGGTCATATTGGAGCTTGCCCTCGGAC 86268 Query 78721 GCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA--TGACT 78778 || || |||| | |||||||||||| || |||||| || | || || | || Sbjct 86267 GCTGGGCTGCCCTGGTACGTCTCGTAAGGGCCAAACTCCTTCGCCATCTCACAGCTCCCT 86208 Query 78779 CGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC-GCGCGCCTTG 78837 | ||| | || ||||| | | |||||||| | | |||| | ||| |||| | Sbjct 86207 TCAACAGCG--GCATGGTAGATGGTTTCGAAGATCTGCAGTTCGAGCCCTGCGTGCCTCG 86150 Query 78838 GTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATA 78897 | | ||| |||| | || || |||||| | |||||||| ||||| |||||||| Sbjct 86149 GGCGAGTCAAACGGCATGCGCAGGGCCATGAACGCGTCGGCCAGACCCTGCACGCCGATT 86090 Query 78898 GCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGA 78957 |||| || ||||||||||||||| || ||| || | || || ||| Sbjct 86089 CCGATGGGGCGGTGGCGCATGTTGGAACGACGCGCCTCCGGAATAGGATAGTGGTTGACG 86030 Query 78958 TCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAA 79017 ||||||| |||||||||||| || ||| ||| ||||| |||| ||| || |||| Sbjct 86029 TCGATGATGCGGTTCAGGTTGAACGCGACCACCTTGGTCACGTCGTGCAACTTCTGGAAA 85970 Query 79018 TCAAAATGATTTCCTTT---GATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACG 79074 | | | | || || |||||| | ||| || | || || || ||||| || Sbjct 85969 TTGTACT---TGCCATTCTCGATGAAGGACGGGAGCGCGATAGACGCGAGATTGCAGACA 85913 Query 79075 GCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATG 79134 |||||||| || || || ||||| || || ||||| | ||| ||||||||||| Sbjct 85912 GCCGTCTCATCGGGAGACGAGTACTCGACAATCTCGGTGCAGAGATTGGACGACTTGATC 85853 Query 79135 GTGCCGATGTTCTTCTGGTT 79154 ||||||| ||||| |||||| Sbjct 85852 GTGCCGAGGTTCTGCTGGTT 85833 Score = 170 bits (188), Expect = 2e-37 Identities = 416/625 (67%), Gaps = 9/625 (1%) Strand=Plus/Plus Query 19841 GCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATC 19900 ||||||||||| ||| ||||| ||||| |||||||||||||||| || || || || || Sbjct 85824 GCCAAGTCAAACCAGCAGAACCTCGGCACGATCAAGTCGTCCAATCTCTGCACCGAGATT 85883 Query 19901 ATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCG 19960 | ||| || || || ||||| || || || ||||| ||||| | || ||| Sbjct 85884 GTCGAGTACTCGTCTCCCGATGAGACGGCTGTCTGCAATCTCGCGTCTATCGCGCTCCCG 85943 Query 19961 ACTTTCGTCAAGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTC 20020 | ||| || || | | | | || || ||| |||| |||||| ||| ||| Sbjct 85944 TCCTTCATCGAGAATGGCAAGTACAATTTCCAGAAGTTGCACGACGTGACCAAGGTGGTC 86003 Query 20021 ACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAG 20080 || || ||||| ||| ||||||| ||| || || | || |||||| Sbjct 86004 GCGTTCAACCTGAACCGCATCATCGACGTCAACCACTATCCTATTCCGGAGGCGCGTCGT 86063 Query 20081 TCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATG 20140 || || ||||||||||| || |||| |||||||| ||||| |||||||||| |||||| Sbjct 86064 TCCAACATGCGCCACCGCCCCATCGGAATCGGCGTGCAGGGTCTGGCCGACGCGTTCATG 86123 Query 20141 ATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGC-GAGCTCAACAAGGGCATCTTCGA 20199 || || | | || ||| ||| |||| ||| | |||| | | |||||||| Sbjct 86124 GCCCTGCGCATGCCGTTTGACTCGCCCGAGGCACGCAGGGCTCGAACTGCAGATCTTCGA 86183 Query 20200 GGCCGTGTACCACGCGGC-CCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGT 20258 || | ||||| || || | || | | || || | || || ||| ||||| | Sbjct 86184 AACCATCTACCATGCCGCTGTTGAAGGGAGC-TGTGAGATGGCGAAGGAGTTTGGCCCTT 86242 Query 20259 ACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCG 20318 ||||||||| | |||| || ||||||||||| | ||||| ||| | ||||| Sbjct 86243 ACGAGACGTACCAGGGCAGCCCAGCGTCCGAGGGCAAGCTCCAATATGACCTATGGGGGA 86302 Query 20319 TCACTGAGAATGAGTTTTG-----GAGCG-CCCTCAAGGTTGAGATCAAGACCCACGGGC 20372 ||||| | || | || | ||| | | |||| || || |||| | Sbjct 86303 TCACTCCTACCGATCTATGGGACTGGGCGAGCTTGAAGGCAAAGGTCGCACAGTACGGTC 86362 Query 20373 TTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGA 20432 |||| ||||| |||| ||||| || ||||| ||||||||||| |||||| | || | Sbjct 86363 TTCGGAACTCCCTGCTTGTCGCTCCGATGCCTACCGCCTCGACGAGTCAGATCCTCGGCA 86422 Query 20433 ACAACGAGGCTTTCGAGCCGTACAC 20457 ||||||| |||||||| ||||| Sbjct 86423 ACAACGAATGCTTCGAGCCCTACAC 86447 Score = 150 bits (166), Expect = 2e-31 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 78185 CGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCA 78244 |||||| ||||| ||||||||||||||||| || ||||||||||| ||||| | ||||| Sbjct 86862 CGCGTG--CGCAAGTAGTACATGCCCGTCTTCAGGCCCTTCTTCCAGCCGTAGAAGTGCA 86805 Query 78245 TACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGT 78304 | |||| ||||| | ||| | | || || | | || |||||||||||| |||||| Sbjct 86804 TGCTCGTCAGCTGGCCCATAGTAGGCGACTGAAGGTGGACGTTGAGCGACTGCGACTGGC 86745 Query 78305 CGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGA 78364 |||| | || || ||||| || || | ||||| |||| ||| || | |||||||||| Sbjct 86744 AGATGAAGGCTCCCCGGTCAGCAGCAAGGTCGAGGACCTTCTTCTGAGAGATCTCCCAGA 86685 Query 78365 TGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATG 78399 |||| ||| || ||||||| || || ||||| Sbjct 86684 CGGTCTTGTAGATCGCCTTCACGTCGTCGGGGATG 86650 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20606 ATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATC 20665 |||||| | || | |||| || |||| |||||| ||||| ||| | ||||||| || Sbjct 86651 ATCCCCGACGACGTGAAGGCGATCTACAAGACCGTCTGGGAGATCTCTCAGAAGAAGGTC 86710 Query 20666 ATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTC 20725 ||||| | || || || || || |||| |||| |||||| ||||||||||| ||| | Sbjct 86711 CTCGACCTTGCTGCTGACCGGGGAGCCTTCATCTGCCAGTCGCAGTCGCTCAACGTCCAC 86770 Query 20726 ATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGG 20785 | || || | ||| |||||| |||||| | ||||||||| | ||||| Sbjct 86771 CTTCAGTCGCCTACTATGGGCCAGCTGACGAGCATGCACTTCTACGGCTGGAAGAAGGGC 86830 Query 20786 CTCAAGACGGGCATGTACTATCTGCGGACCCG 20817 || ||||||||||||||||| |||| || || Sbjct 86831 CTGAAGACGGGCATGTACTACTTGCGCACGCG 86862 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 ||| || |||||||| ||| ||||||||||||||| |||||||||||||| || || Sbjct 85147 CGCACAATCCTTGAGAGTCGAGTAGATGCCCTCGATGGAGTCGTCCTTCATGCACACAAG 85088 Query 79743 GAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTG 79802 ||||| || ||| |||||| || ||||||||||| ||||| |||| || || Sbjct 85087 AAAGCATGAACTCAGCTGGGGGTTGGGAGTGCCGGCGTTGAAAAGGGTGGGCGATGCATG 85028 Query 79803 CGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCC 79862 |||||| || | |||||| | ||| || ||| || || || || || Sbjct 85027 GGTGAAGTACCGCTCCGACATCAGGTGGTAGGTTTCCAGAACACGGTCGATATCAGATCC 84968 Query 79863 GTGGATGCCGACCGCGACGCGCATGA 79888 ||| || || || || || ||||||| Sbjct 84967 GTGTATACCAACAGCAACACGCATGA 84942 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19112 CTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACA 19171 ||| ||||||| || || || || || || || || || || || | || || Sbjct 84938 CTTCTCATGCGTGTTGCTGTTGGTATACACGGATCTGATATCGACCGTGTTCTGGAAACC 84997 Query 19172 TACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGT 19231 ||| |||||||| || || |||||| || || |||| ||||||||||||||||| Sbjct 84998 TACCACCTGATGTCGGAGCGGTACTTCACCCATGCATCGCCCACCCTTTTCAACGCCGGC 85057 Query 19232 ACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAG 19291 || |||||| ||| || || || || ||| |||||||| ||| ||| ||| Sbjct 85058 ACTCCCAACCCCCAGCTGAGTTCATGCTTTCTTGTGTGCATGAAGGACGACTCCATCGAG 85117 Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCG 19321 ||||||||| ||| |||||||| || ||| Sbjct 85118 GGCATCTACTCGACTCTCAAGGATTGTGCG 85147 >seq24 Length=169626 Score = 176 bits (194), Expect = 5e-39 Identities = 359/528 (68%), Gaps = 8/528 (2%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||||| || | |||||||||| | | ||||||||| ||||| || |||| Sbjct 85995 TGTACAAGAAGGCTGAGGCTTCATTCTGGACTGCCGAGGAGATGGACCTTTCCAAGGACC 86054 Query 59653 TGAAGGATTGGGACAAGC---TCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 | | |||||| |||| | |||| |||| |||| ||||||||| | || || | Sbjct 86055 TCCACGATTGGAACAACCGCCTCAACGACGATGAGCGTCATTTCATCTCGCACGTGCTCG 86114 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGG 59769 |||||||||| || || || || |||| || || | | | | || ||||| | Sbjct 86115 CCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACCTTGTCGAGCGGTTCTCCAATG 86174 Query 59770 ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCC 59829 | |||||| |||||||| || | ||||||| | ||| | | ||| |||| Sbjct 86175 AGGTCCAGGCCGCCGAGGCACGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCC 86234 Query 59830 ACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTG 59889 |||| ||||| |||||||| | ||||| | || |||||||||| | || | Sbjct 86235 ACTCGGAGACATACTCGCTGCTCATCGACACGTACATCAAGGATCCCAAGCAGCGCGAGC 86294 Query 59890 GTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATG 59948 || ||| ||||| |||||| | || ||| | || | || || || ||||| || Sbjct 86295 ACCTTTTCGACGCCATCGAGACGATTCCTTGCA-TCAAGAAGAAGGCGGACTGGGCTTTG 86353 Query 59949 CAGTGGATGAGT--CCTGGAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 || ||||| | | |||| | | || || | || ||| | ||||| || ||| Sbjct 86354 CACTGGATCTCTGACAAGGAGTCCGCCTTCGCGGAGCGGCTCGTGGCTTTCGCGGCTGTG 86413 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || |||||||||||||| || || | || ||||||||||| ||||| ||||| Sbjct 86414 GAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTG 86473 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 ||||| || || | |||||||| ||||| || || || ||||||||| Sbjct 86474 ATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGGC 86521 Score = 125 bits (138), Expect = 8e-24 Identities = 340/511 (67%), Gaps = 16/511 (3%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGAC---AAG 59669 || |||||| ||||||||||||| |||||||| ||||| | ||| ||| || ||| Sbjct 84492 TCGTTCTGGACCGTCGAGGAGATCAACCTCGCCAACGACCTCATGGACTGGAACTACAAG 84433 Query 59670 CTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGAT 59729 ||||| |||||| || |||||| || || || |||||||| || || Sbjct 84432 CTCAACGCGAACGAGCGCCACTTCATCTCCTACGTACTCGCTTTCTTCGCCGCCTCGGAC 84373 Query 59730 GGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789 || || |||| || ||| | | | | || || || || || ||| |||||||| Sbjct 84372 GGCATCGTGAACGAGAATCTCGTCGAGCGGTTCTCTAACGAGGTACAGGCCGCCGAGGCG 84313 Query 59790 CGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTC 59849 || | || |||| | ||| | | |||| | | ||||| |||||||||||||| Sbjct 84312 CGCTGCTTTTACGGCTTCCAGATCATGATCGAGAATGTGCACTCGGAGACGTACTCGCTG 84253 Query 59850 ATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT--CTGTTCCGTGCCATAG 59907 | ||||| | || ||||||| || | ||| || || |||||| ||||| | Sbjct 84252 CTCATCGACACGTATATCAAGGACCCCG--CTGAACGCGCGTTCCTGTTCGACGCCATCG 84195 Query 59908 AGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGA-TGAGTCCTGG 59965 | | | |||| | | | | || || || ||||| ||| |||| |||| | | Sbjct 84194 ACACCATCCCGTGTA-TCCGTAAGAAGGCGGACTGGGCGTTGCGCTGGATTGAGGAC--G 84138 Query 59966 AGC-ATCA---TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCT 60021 ||| ||| ||||| | | || | || ||||| || || || | ||||||| Sbjct 84137 AGCGTTCAGTGTTTGCGGAGAGGCTGGTCGCATTTGCGGCAGTCGAGGGCGTGTTCTTCT 84078 Query 60022 CTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTT 60081 | || |||||| || ||||||||||| || ||||| || | |||||||| ||| | Sbjct 84077 CCGGGTCGTTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGGTTGATGCCGGGGTTGACGT 84018 Query 60082 TCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 |||| |||||||| || ||| |||||||| Sbjct 84017 TCTCTAACGAGCTTATCAGCCGAGACGAGGG 83987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548519479309440