Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq24 147 2e-30 seq443 95.1 1e-14 seq548 93.3 5e-14 >seq24 Length=169626 Score = 147 bits (162), Expect = 2e-30 Identities = 325/484 (67%), Gaps = 10/484 (2%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 ||||| || |||| || || ||||| || || |||||||| | ||| ||||||| Sbjct 86499 TCATTGGAGAACGTGAGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCA 86440 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||||||| ||||||||| || || ||| ||| || || || || || | |||||| Sbjct 86439 AAGGAACCAGAGAAGAAGATACCCTCCACAGCCGCGAAAGCCACGAGCCGCTCCGCGAAG 86380 Query 74910 GGTGCATC---GGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG 74966 | | || | || ||||| | |||||| || || || |||| ||| Sbjct 86379 GCGGACTCCTTGTCAGAGATCCAGTGCAAAGCCCAGTCCGCCTTCTTCTTGATGCAAGGA 86320 Query 74967 ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC--GGGATCCTTGACGAGCTTGT 75024 | || ||||| || | ||| ||| ||| | || | ||||||||||| | | ||| Sbjct 86319 ATCGTCTCGATGGCGTCGAAAAGG--TGCTCGCGCTGCTTGGGATCCTTGATGTACGTGT 86262 Query 75025 CAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGA 75084 | || | || ||||| |||||||| || || ||| | | |||| | |||||| Sbjct 86261 CGATGAGCAGCGAGTATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGA 86202 Query 75085 AAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGA 75144 | | || ||||| || ||| || || || || || | | | | ||||| | | Sbjct 86201 AGCAGCGTGCCTCGGCGGCCTGGACCTCATTGGAGAACCGCTCGACAAGGTTCTCGTTCA 86142 Query 75145 CGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGT 75204 |||||||||||||||||||||| || || || || ||| || || |||||||||| Sbjct 86141 CGATGCCGTCCGAGGCGGCGAAGAAGGCGAGCACGTGCGAGATGAAATGACGCTCATCGT 86082 Query 75205 CAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCC 75261 | ||| | |||| |||||| | |||||| | | || ||||||||| | |||| Sbjct 86081 CGTTGAGGCGGTTGTTCCAATCGTGGAGGTCCTTGGAAAGGTCCATCTCCTCGGCAGTCC 86022 Query 75262 AGAA 75265 |||| Sbjct 86021 AGAA 86018 Score = 136 bits (150), Expect = 4e-27 Identities = 336/505 (67%), Gaps = 10/505 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || || |||| ||| || | || || || |||| | || ||||| | || |||||| Sbjct 83987 CCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTCAACCCCGGCATCAACCCCCGCTTC 84046 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||| ||| || ||||| ||| || || |||||| | ||| ||||| |||||| Sbjct 84047 TTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAACACGCCCTCGACTGCCGCAAAT 84106 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCATTC 74944 ||||| || | | ||| ||| || | || ||| ||||| | ||||| || Sbjct 84107 GCGACCAGCCTCTCCGCAAACACTGAA-CGCTCGTCCTCAATCCAGCGCAACGCCCAGTC 84165 Query 74945 AGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTT 75003 || || | | | || |||| || ||||| || | ||| ||| || || Sbjct 84166 CGCCTT-CTTACGGATACACGGGATGGTGTCGATGGCGTCGAACAGGAACGCGCGTTCAG 84224 Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 |||| ||||||| | |||| || | || |||||||||||||| || | |||| Sbjct 84225 CGGGGTCCTTGATATACGTGTCGATGAGCAGCGAGTACGTCTCCGAGTGCACATTCTCGA 84284 Query 75064 TGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT 75123 | | |||| | |||| || | |||||||| || |||||| || || || || Sbjct 84285 TCATGATCTGGAAGCCGTAAAAGCAGCGCGCCTCGGCGGCCTGTACCTCGTTAGAGAACC 84344 Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 | | ||| |||||| | ||||||||||||||||||||||| ||||| ||||| Sbjct 84345 GCTCGACGAGATTCTCGTTCACGATGCCGTCCGAGGCGGCGAAGAAAGCGAGTACGTAGG 84404 Query 75184 TGATAAAGTGGCGCTCATCGTCAGTGAGTTT---GTCCCAATCCTTCAGGTCCCCCGCCA 75240 ||| ||||||||||| | | |||| || || ||| ||| | ||||| || | Sbjct 84405 AGATGAAGTGGCGCTCGTTCGCGTTGAGCTTGTAGTTCCAGTCCATGAGGTCGTTGGCGA 84464 Query 75241 AATCAATCTCCTCGACCGTCCAGAA 75265 | ||||||||||| |||||||| Sbjct 84465 GGTTGATCTCCTCGACGGTCCAGAA 84489 >seq443 Length=126294 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789 |||| ||| ||| ||| || |||||||| | ||||||| | | ||| | |||| Sbjct 86666 AAGGCGATCTACAAGACCGTCTGGGAGATCTCTCAGAAGAAGGTCCTCGACCTTGCTGCT 86725 Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCA 55849 || || || || | |||| |||||| ||||| || ||| || | | || ||| | Sbjct 86726 GACCGGGGAGCCTTCATCTGCCAGTCGCAGTCGCTCAACGTCCACCTTCAGTCGCCTACT 86785 Query 55850 CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATG 55909 ||| | || ||| |||||||| ||||| ||||||||||| || |||||||| ||| Sbjct 86786 ATGGGCCAGCTGACGAGCATGCACTTCTACGGCTGGAAGAAGGGCCTGAAGACGGGCATG 86845 Query 55910 TACTATCTGCGGACCCG 55926 ||||| |||| || || Sbjct 86846 TACTACTTGCGCACGCG 86862 >seq548 Length=24274 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 124673 AATCTTGCGCGTCACAAAC-TCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGC 124731 ||||||||| || || ||| || || || || ||| |||||||||||||| || |||| Sbjct 15779 AATCTTGCGGGTGACGAACGTCCGA-CCACGGCGCGGCGACTCGTGGTTGAAGAGGATGC 15837 Query 124732 CAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGA 124791 || | |||||| |||| ||||||| ||||||||| || || ||||| | || | | Sbjct 15838 CATTGCACGCATACATGCCGTACGCCTCGCGGTAATTGACGGTGATCCAGAAGCCGTATA 15897 Query 124792 GCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 |||| | || || || ||| || || |||||||| || Sbjct 15898 GCTTCGCGACACCGTATGGGGACCGCGGATAGAATGGCGT 15937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210692004800