Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq460 176 5e-39 seq443 152 6e-32 seq24 102 9e-17 seq55 89.7 6e-13 >seq460 Length=141031 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| Sbjct 61326 ATGCAAATCTTCGTTAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCG 61267 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || |||||||||||||| || || || |||||| Sbjct 61266 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 61207 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||||| || || || | ||||| || Sbjct 61206 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTTTCGGACTACAAC 61147 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || ||| | ||||| |||||||| Sbjct 61146 ATTCAGAAGGAGTCGACCCTTCACCTCGTCCTTCGTCTACGCGGTGG 61100 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTT--GAGTCAG 27463 ||||| |||||||||||||| | |||| |||||| || || || | | |||| | Sbjct 62025 ATGCAGATCTTTGTCAAGACTTTGACCGACAAGACCATCACCTACGACGGTCGGAGTTCG 61966 Query 27464 GTGATAG---CATTGCAAATT---TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTC 27517 | || |||| | | | | |||||||| || || ||||||||||| || |||| Sbjct 61965 TCGGTACGACCATTCGACAATACGTCAAGGCTAAGATCCAAGACAAGGAGGGTATCCCTC 61906 Query 27518 CAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAG 27577 | |||||||||||||| || |||||||| |||||||| ||||||| ||||||||| | | Sbjct 61905 CTGACCAGCAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGATGGTCGTACCCTCTCCG 61846 Query 27578 ACTATAATGTCCAAAAGGAATCCACTCTTCATCT 27611 | ||||| | || ||||| |||||| || || Sbjct 61845 ATTATAACATTCAGAAGGAGAGCACTCTCCACCT 61812 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||| |||||||||||||| || || || || ||||| || ||||| | || || Sbjct 62148 ATTCCTCCCGACCAGCAGCGTCTTATCTTCGCCGGGAAGCAGCTTGAGGACGGCCGCACT 62089 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || | || ||||| ||||| |||||||| ||| | ||||||||||| Sbjct 62088 CTTTCTGACTACAACATTCAGAAGGAGTCCACGCTTCATCTCGTCCTCCGTCTTCGCGGA 62029 Query 27631 GG 27632 || Sbjct 62028 GG 62027 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| |||||||||||||| || || || ||||| ||||| Sbjct 62306 ATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 62247 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||||| || | || || || || |||||||||||||| Sbjct 62246 GATACCATTGATAACGTCAAAGCCAAGATCCAGGACAAGGAGGG 62203 >seq443 Length=126294 Score = 152 bits (168), Expect = 6e-32 Identities = 420/633 (66%), Gaps = 22/633 (3%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| ||||| || |||||||| |||||||||||| ||| || || |||||| Sbjct 86447 GTGTAGGGCTCGAAGCATTCGTTGTTGCCGAGGATCTGACTCGTCGAGGCGGTAGGCATC 86388 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCA-AATCTGA 80513 || |||| | ||| || ||||| || |||| || || | | | || || || Sbjct 86387 GGAGCGACAAGCAGGGAGTTCCGAAGACCGTACTG--TGCGACCTTTGCCTTCAAGCTCG 86330 Query 80514 CCAAAAATCA---ACCCCAACGCTGTGACCCCACAT--GTCGTGCTGCAAGATGCCCTCC 80568 || | || | | | | |||| ||| ||| ||| | || | ||||||| Sbjct 86329 CCCAGTCCCATAGATCGGTAGGA-GTGATCCCCCATAGGTCATATTGGAGCTTGCCCTCG 86271 Query 80569 GACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGAC 80628 ||||| || ||| | |||||||||| ||||| | ||| |||| |||||| | Sbjct 86270 GACGCTGGGCTGCCCTGGTACGTCTCGTAAGGGCCAAACTCCTTCGCCATCTCACAG--C 86213 Query 80629 TCCAT--AAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACC--GCGCGC 80684 ||| | || || || || || ||| || |||| | |||| || ||| || Sbjct 86212 TCCCTTCAACAGCGGCATGGTAGATGGTTTCGAAGATCTGCA-GTTCGAGCCCTGCGTGC 86154 Query 80685 CTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCC 80744 || || ||| |||| || || || ||||||| |||| ||||| ||||| ||||| Sbjct 86153 CTCGGGCGAGTCAAACGGCATGCGCAGGGCCATGAACGCGTCGGCCAGACCCTGCACGCC 86094 Query 80745 GATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTT 80804 ||| |||| |||||||||||| |||| || || ||||||||||| || || ||| Sbjct 86093 GATTCCGATGGGGCGGTGGCGCATGTTGGAACGACGCGCCTCCGGAATAGGATAGTGGTT 86034 Query 80805 ATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTG 80864 ||||||| ||||||||||||| | || ||| || || || || | ||||| Sbjct 86033 GACGTCGATGATGCGGTTCAGGTTGAACGCGACCACCTTGGTCACGTCGTGCAACTTCTG 85974 Query 80865 AAAGTCGAATTGGTTCCCCTTC---ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCA 80921 || | | | || || ||| | || | ||| || | ||||| |||||||| Sbjct 85973 GAAATTG---TACTTGCCATTCTCGATGAAGGACGGGAGCGCGATAGACGCGAGATTGCA 85917 Query 80922 CACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTT 80981 || ||| ||| || | | | ||||||| || || ||||| | ||| || ||||| Sbjct 85916 GACAGCCGTCTCATCGGGAGACGAGTACTCGACAATCTCGGTGCAGAGATTGGACGACTT 85857 Query 80982 AATTGTACCCAGGTTTTTCTGGTTTGACTTGGC 81014 || || || ||||| | ||||||||||||||| Sbjct 85856 GATCGTGCCGAGGTTCTGCTGGTTTGACTTGGC 85824 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 ||||| |||| ||||||||||||||||| |||||||||||||||||||| | |||||| Sbjct 86862 CGCGTGCGCAAGTAGTACATGCCCGTCTTCAGGCCCTTCTTCCAGCCGTAGAAGTGCATG 86803 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 | |||| | | || || || | | || ||| || ||||| ||||| ||| Sbjct 86802 CTCGTCAGCTGGCCCATAGTAGGCGACTGAAGGTGGACGTTGAGCGACTGCGACTGGCAG 86743 Query 80155 ATGAAAGCCCCACGATCTGCCGC 80177 ||||| || || || || || || Sbjct 86742 ATGAAGGCTCCCCGGTCAGCAGC 86720 >seq24 Length=169626 Score = 102 bits (112), Expect = 9e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 |||| |||| ||||| || |||||| || || ||||| ||||| || || || | Sbjct 86388 AGCGGCTCGTGGCTTTCGCGGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCA 86447 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | |||||||| || ||||| ||||||||||| ||||| |||| || || ||||| |||| Sbjct 86448 TCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTCACGTTCTCCAATGAGCTTATCT 86507 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAG 64890 | || |||||||| | ||| || || ||| || ||||| || |||||| Sbjct 86508 CGCGTGACGAGGGCATGCACACCGACTTCGCGTGCTTGCTTTTCAGTCATCTCAAG 86563 >seq55 Length=161460 Score = 89.7 bits (98), Expect = 6e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| || ||||||||||| || || || || || ||||| |||||||||| || ||| Sbjct 8312 ATTCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACC 8371 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 || ||| ||||| || |||| ||||| ||||| || || || || | ||||| || || Sbjct 8372 CTCAGC-GACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGTCTGCGTGG 8430 Query 27630 TGG 27632 ||| Sbjct 8431 TGG 8433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304867989120