Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29]
776 sequences; 33,668,918 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq403 98.7 8e-16
seq274 82.4 6e-11
>seq403
Length=43082
Score = 98.7 bits (108), Expect = 8e-16
Identities = 202/298 (68%), Gaps = 2/298 (1%)
Strand=Plus/Plus
Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30177
||| ||||| |||| | ||||||||| | ||| || |||| | |||| ||| |
Sbjct 18605 GGGATTCCACGCGCTGAGGATGATGCGACGGTCGGTGGGATTGTGCTTGATCTTGTCGAT 18664
Query 30178 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTC-ATGTCCGTGTACT 30236
| | || ||||||||||| ||| | || | || | || | || |||| |||
Sbjct 18665 GCACTCCTGGAGCTGATCCACGCCCTTGCCGGTATAAT-TGGCGTCGCAGTCCTCGTATC 18723
Query 30237 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30296
||| || || || ||||| |||||||| || || || || ||||| |||||| || |
Sbjct 18724 GTGCGCCAAAGTGTCTCCATTGGAACCCATATACGGGCCCTAGGTCGCCCTCTCGCCGAT 18783
Query 30297 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30356
| | || || | ||| || | || || | || ||||| | ||||| ||||| | |
Sbjct 18784 GTCCTAAACCGCGCTTCTCGAGGAACTCCTTCGAGCCGTTACCATCCCAAATCTTGATGC 18843
Query 30357 CCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414
||||| | || |||| ||||||| ||| | || | | |||||| | ||||||||
Sbjct 18844 CCTTCGCGGACAGCTGCTTGGAGTCCGTGCATCCGCGTATGAACCATAAGAGCTCCTC 18901
>seq274
Length=162771
Score = 82.4 bits (90), Expect = 6e-11
Identities = 110/148 (74%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 52761 CCAGAGATGGGCGACAAGTTTGCGTCGT-TCACGGCGCAAAAGGGGACGTGCGGAGCCGT 52819
||| |||| ||||||||||| || ||| |||||| || ||||| || ||| |
Sbjct 148870 CCACAGATCGGCGACAAGTTCGCTTCGCGTCACGGT-CAGAAGGGTACCATCGGTATCA- 148813
Query 52820 CCTGAC-CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCA 52878
||| | ||||||||||||||| ||| ||| || | ||||||| |||||||||
Sbjct 148812 CCTACCGCCAGGAGGACATGCCGTTCACGGCGGAGGGCATCACGCCCGACATCATCATCA 148753
Query 52879 ACCCCCACGCCTTTCCCTCCAGGATGAC 52906
||||||||||| ||||||| | |||||
Sbjct 148752 ACCCCCACGCCATTCCCTCTCGTATGAC 148725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406306557319392
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |