Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq403 91.5 1e-13 >seq403 Length=43082 Score = 91.5 bits (100), Expect = 1e-13 Identities = 209/307 (68%), Gaps = 11/307 (4%) Strand=Plus/Plus Query 6780 CCTTCGGG-TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTG 6838 ||| |||| |||||||||| | | ||| | | ||| || || |||| | || Sbjct 18600 CCTGCGGGATTCCACGCGCTGAGGATGATGCGACGGTCGGTGGGATTGTGCTTGATCTTG 18659 Query 6839 TCGAT-CACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGC--TCCCC 6895 ||||| ||| | ||| ||||| ||| | |||| || | ||| | || |||| ||| | Sbjct 18660 TCGATGCAC-TCCTGGAGCTGATCCACGCCCTTGCCGGTATAATTGGCGTCGCAGTCCTC 18718 Query 6896 CGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCC 6955 || | |||| |||||||||||| |||||||| || || || || | ||||||||| Sbjct 18719 GTATCGTGCGCC--AAAGTGTCTCCATTGGAACCCATATACGGGCCCTAGGTCGCCCTCT 18776 Query 6956 TCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTC--TCGAGACCCGTGAGCGTCCCAGA 7013 |||| | || || ||||| || || || || ||||| |||| | | ||||| | Sbjct 18777 CGCCGATGTCCTAAACCGCGCTTCTCGAGGAACTCCTTCGAG--CCGTTACCATCCCAAA 18834 Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073 |||| | ||| | || |||| ||||| || |||| || | | |||||| | | Sbjct 18835 TCTTGATGCCCTTCGCGGACAGCTGCTTGGAGTCCGTGCATCCGCGTATGAACCATAAGA 18894 Query 7074 GCTCCTC 7080 ||||||| Sbjct 18895 GCTCCTC 18901 Score = 91.5 bits (100), Expect = 1e-13 Identities = 209/307 (68%), Gaps = 11/307 (4%) Strand=Plus/Minus Query 34265 GAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGG 34324 |||||||| | |||||| | | || |||| || ||||| |||| || | ||| Sbjct 18901 GAGGAGCTCTTATGGTTCATACGCGGATGCACGGACTCCAAGCAGCTGTCCGCGAAGGGC 18842 Query 34325 GTGAAGATCTGGGACGCTCACGGGTCTCGA--GACTTTCTGGACAAGCGGGGGTTCCCAT 34382 | ||||| ||||| | | |||| ||||| || || || || ||||| || || | Sbjct 18841 ATCAAGATTTGGGATGGTAACGG--CTCGAAGGAGTTCCTCGAGAAGCGCGGTTTAGGAC 18784 Query 34383 CTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGG 34442 |||| ||||||||| | || || || || |||||||| |||||||||||| |||| Sbjct 18783 ATCGGCGAGAGGGCGACCTAGGGCCCGTATATGGGTTCCAATGGAGACACTTT--GGCGC 18726 Query 34443 AGTATCGGGGGA--GCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGT 34500 | || | ||| |||| || | ||| | || |||| | ||| ||||| ||| | || Sbjct 18725 ACGATACGAGGACTGCGACGCCAATTATACCGGCAAGGGCGTGGATCAGCTCCAGGA-GT 18667 Query 34501 G-ATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA-C 34558 | ||||||| | |||| || || ||| | | ||| | | |||||||||| | Sbjct 18666 GCATCGACAAGATCAAGCACAATCCCACCGACCGTCGCATCATCCTCAGCGCGTGGAATC 18607 Query 34559 CCGAAGG 34565 ||| ||| Sbjct 18606 CCGCAGG 18600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258051854720