Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq460 176 1e-38 seq112 107 4e-18 seq55 93.3 1e-13 seq121 87.8 4e-12 >seq460 Length=141031 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||||| || || ||||| || |||| ||| || | ||||| Sbjct 61115 AGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCATCC 61174 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 61175 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC 61234 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||||||||| || || |||||||||||||| ||| Sbjct 61235 TGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTC 61294 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | ||||| Sbjct 61295 TTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 61326 Score = 109 bits (120), Expect = 1e-18 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| |||||| ||| || || ||||||||||| | ||||| | ||||| ||||| Sbjct 61812 AGGTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGT 61871 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| || ||||| || || || ||||||||||| | || |||||||| |||||| Sbjct 61872 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATC 61931 Query 211029 TTTTGTTTCACG--TTTTCG-ATGGT-GT----CAGAGCTTTCAACCTCGAGAGTGATCG 211080 || || ||| || ||| ||||| || || || | | ||| ||||| | Sbjct 61932 TTAGCCTTGACGTATTGTCGAATGGTCGTACCGACGAACTCCGACCGTCGTAGGTGATGG 61991 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| | || | |||||| ||||| | |||||| Sbjct 61992 TCTTGTCGGTCAAAGTCTTGACAAAGATCTGCAT 62025 Score = 91.5 bits (100), Expect = 3e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| || ||||| |||||||| || || ||||| || || | ||| || Sbjct 62033 CGAAGACGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTG 62092 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | || || || |||||||| || ||||||||||| || || ||||| ||||||| Sbjct 62093 CGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAA 62147 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| ||| ||||| || ||||| || ||| || |||||| Sbjct 62203 CCCTCCTTGTCCTGGATCTTGGCTTTGACGTTATCAATGGTATCCGAGGACTCGACCTCG 62262 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| || || | |||||| Sbjct 62263 AGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCAT 62306 >seq112 Length=444765 Score = 107 bits (118), Expect = 4e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| ||||||||||| ||| ||||||||| Sbjct 44272 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCAACCTCG 44331 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || ||||||||||| || || | |||||| Sbjct 44332 AGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 44375 >seq55 Length=161460 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| ||| || || ||||| ||||| ||| ||||||||| Sbjct 8254 CCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCG 8195 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| |||||||| ||||| || || | |||||| Sbjct 8194 AGGGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 8151 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || ||||| | ||||| Sbjct 8418 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 8359 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || ||||||||||| |||||||| ||||| || ||||| || |||| Sbjct 8358 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGAA 8313 >seq121 Length=508097 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || || ||||| || |||||||| || || ||||| | ||||| Sbjct 178736 AGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 178677 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || ||||||||||| |||||||| || || || ||||| || |||| Sbjct 178676 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGAA 178631 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| ||||||||||| || || ||||| Sbjct 178567 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCA 178508 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| ||||| || ||||| || || | |||||| || Sbjct 178507 AGGGTGATGGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCATCTT 178461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159140475131240