Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq460 143 6e-29 seq756 96.9 8e-15 >seq460 Length=141031 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || || | ||||| || | | || | ||||| Sbjct 61115 AGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCATCC 61174 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||||||||| ||||| |||||||| Sbjct 61175 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC 61234 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || | || || || | ||||| ||| Sbjct 61235 TGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTC 61294 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| ||| || | ||| | |||||| Sbjct 61295 TTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 61326 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 |||||||||||| || || || | || ||||||| | || | ||||| || || Sbjct 61812 AGGTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGT 61871 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| ||||| || || || ||||| || || ||||| ||||||||||||||| Sbjct 61872 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATC 61931 Query 225628 TT 225629 || Sbjct 61932 TT 61933 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| || || || ||||| || || || | ||||| || | | ||| Sbjct 62033 CGAAGACGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTG 62092 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || ||||||||||| ||||||||||| || || |||||||| ||||||| | Sbjct 62093 CGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACTT 62152 Query 225613 T 225613 | Sbjct 62153 T 62153 >seq756 Length=1310 Score = 96.9 bits (106), Expect = 8e-15 Identities = 189/275 (69%), Gaps = 7/275 (3%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||| ||||| |||| ||||| ||| | | || || |||||| | | Sbjct 1114 ACTTTATACTTAATGTTTGCATTATTTTCAGGTTTAGTTGGAACAGCATTTTCAGTTTTA 1055 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATAT-TGAGTGGTAATAGCCAACTTT 7558 || || ||||||||| ||| ||| || ||| |||| | || |||| ||| | | Sbjct 1054 ATTAGATTAGAATTATCTGGTCCAGGAGTACAATATATATCAGA--TAAT---CAATTAT 1000 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || ||| ||||| || ||||| | | |||||||||||| | |||||||| | Sbjct 999 ATAATAGTATAATTACAGCACATGCTATATTAATGATTTTCTTTATGGTTATGCCTGCAT 940 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| ||||| || |||| || | || ||| | | || | ||| |||||||| | Sbjct 939 TAATAGGAGGTTTTGGTAATTTCTTATTACCATTATTAGTAGGAGGTCCAGATATGGCAT 880 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 |||| || | || ||||| ||||| |||||| || Sbjct 879 TTCCTAGATTAAATAATATTAGTTTCTGATTATTA 845 Score = 91.5 bits (100), Expect = 4e-13 Identities = 82/101 (81%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTG--ATAAAGGATAGGATCGCCTCCGCCT 370729 |||||| || ||||| ||||||||||||||||| ||||| |||||||| || || || Sbjct 435 TTCAGGGTGTCCAAAGAATCAGAATAAATGTTGGAATAAA--ATAGGATCACCACCACCA 492 Query 370730 GATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | ||||| || |||||||||||||||||||||||| Sbjct 493 GCTACTTCAAAGAATGAAGTATTAAAATTTCTATCAGTTAA 533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192519343258544