Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq460 187 5e-42 seq24 129 1e-24 seq112 107 4e-18 seq121 98.7 2e-15 seq55 98.7 2e-15 >seq460 Length=141031 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| || || || | || || || || ||||||||||| | Sbjct 61099 ACCACCGCGTAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 61158 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||||||||||||| || || || ||||| ||||| | || || ||||| ||| Sbjct 61159 AAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 61218 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| || || || | ||||| |||||||| | ||||| Sbjct 61219 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGAC 61278 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || |||| |||||||||||| || ||||| Sbjct 61279 CTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 61326 Score = 120 bits (132), Expect = 6e-22 Identities = 154/205 (75%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 ||||| || || || ||||| || || | || || || |||||||| ||||| || || Sbjct 61821 GTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGCTTGCCA 61880 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 |||||||| | ||| || |||||| || ||||||||||||||||||||||| || || Sbjct 61881 GCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTAGCCTTG 61940 Query 283023 ACG--GTATCG-ATAGT-GT-CCGA--AGCTTCGA-CTTCGAGAGTGATCGTCTTACCCG 283074 ||| | ||| || || || |||| | || ||| | ||| ||||| ||||| | | Sbjct 61941 ACGTATTGTCGAATGGTCGTACCGACGAACTCCGACCGTCGTAGGTGATGGTCTTGTCGG 62000 Query 283075 TCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||| || || |||||||| Sbjct 62001 TCAAAGTCTTGACAAAGATCTGCAT 62025 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| ||||| ||| |||| || || ||||| | ||||| ||| Sbjct 62203 CCCTCCTTGTCCTGGATCTTGGCTTTGACGTTATCAATGGTATCCGAGGACTCGACCTCG 62262 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 62263 AGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCAT 62306 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || || ||||| | |||| || || || ||||||||||||| Sbjct 62026 ACCTCCGCGAAGACGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCAGA 62085 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || |||||||| ||||| | ||| || ||||| || Sbjct 62086 AAGAGTGCGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 62145 Query 282992 AATAC 282996 ||||| Sbjct 62146 AATAC 62150 >seq24 Length=169626 Score = 129 bits (142), Expect = 1e-24 Identities = 139/183 (76%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| || || |||||| | || |||||||| |||||||| || ||| | Sbjct 83796 CTCATCGGCATGAACGCCGACCTCATGTGCCAGTATATCGAGTTCGTAGCGGACCGTCTG 83737 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| ||||| ||| ||||||| || | ||| |||||| |||| || ||||| Sbjct 83736 CTCGTCGCGCTCGGGAACGAGAAGCACTACCGCGCCACGAACCCGTTCGACTTCATGGAC 83677 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAG 230401 ||||| || |||||||| || || ||||||||||| || || ||| ||| || ||| | Sbjct 83676 CTCATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAACGCGTCTCCGAGTACGCAATG 83617 Query 230402 GCC 230404 ||| Sbjct 83616 GCC 83614 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| | | |||||| | || || ||||| ||||| ||||||||| || Sbjct 86705 CTCATCGGCATGAACTCGAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTT 86764 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || | ||||| || ||| | ||||| |||| ||| ||||| Sbjct 86765 CTCGTCGCTCTCGGCGATGAGAAGTACTACAACGTGACCAACCCGTTCGATTTCATGGAC 86824 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGT 230386 | || || |||||||| || || ||||||||||| ||||| || Sbjct 86825 ATGATCTCGCTCCAGGGCAAGACAAACTTCTTCGAGAAGCGGGT 86868 >seq112 Length=444765 Score = 107 bits (118), Expect = 4e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | ||||| |||||||| | || || ||| Sbjct 44272 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCAACCTCG 44331 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| || || | |||||||||||| |||||||| Sbjct 44332 AGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 44375 >seq121 Length=508097 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | ||||| ||||| |||| || || || Sbjct 178567 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCA 178508 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 || ||||| ||||| ||||| | ||||| ||||| |||||||| |||| Sbjct 178507 AGGGTGATGGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCATCTTCA 178459 >seq55 Length=161460 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| ||||| || | |||||||||||||| | || || ||| Sbjct 8254 CCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCG 8195 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| ||||| | ||||| ||||| |||||||| Sbjct 8194 AGGGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 8151 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| || || || | ||| || || |||||||||||||| Sbjct 8434 ACCACCACGCAGACGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 8375 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||||| || || ||||| || Sbjct 8374 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGG 8315 Query 282992 AATAC 282996 ||||| Sbjct 8314 AATAC 8310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046728792795504