Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq460 138 3e-27 seq112 84.2 5e-11 >seq460 Length=141031 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || ||||| |||||||| || || ||| Sbjct 61323 CAAATCTTCGTTAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCGGAC 61264 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || ||||| || |||||||| Sbjct 61263 ACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAGCAG 61204 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| ||||| | || ||| | || || ||| | Sbjct 61203 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTTTCGGACTACAACATT 61144 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 61143 CAGAAGGAGTCGACCCTTCACCTCGT 61118 >seq112 Length=444765 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || ||||| |||||||| || ||| ||| Sbjct 44372 CAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCGGAC 44313 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| ||||| |||||||| || || Sbjct 44312 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGG 44272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203719231902544