Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29]
776 sequences; 33,668,918 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq460 138 1e-27
seq55 111 1e-19
seq121 95.1 1e-14
seq112 89.7 5e-13
>seq460
Length=141031
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||||||||| | || || || || || ||||||||||||||| ||||| ||
Sbjct 61100 CCACCGCGTAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAA 61159
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || |||||||||||||||||||| || |||||||| ||||| | ||
Sbjct 61160 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 61219
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || |||| || | | | ||||| |||||| ||
Sbjct 61220 ATACCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATGGTGTCCGACGACTCGAC 61278
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || ||||| ||||| ||||| || |||||
Sbjct 61279 CTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 61326
Score = 105 bits (116), Expect = 6e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || ||||| |||||| ||||||||||||||| ||||| ||
Sbjct 62027 CCTCCGCGAAGACGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCAGAA 62086
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || |||||||| |||||||| || || ||||| ||||| | |||
Sbjct 62087 AGAGTGCGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 62146
Query 41756 A 41756
|
Sbjct 62147 A 62147
Score = 96.9 bits (106), Expect = 3e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716
|| || || ||||||||||||||||||||||| ||||||||||| || | || || ||
Sbjct 61812 AGGTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGT 61871
Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769
|||||||| || || || || ||||| ||||| | || | | |||||||||
Sbjct 61872 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTC 61924
>seq55
Length=161460
Score = 111 bits (122), Expect = 1e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||| || || || ||| ||||||||| ||||| |||||| |
Sbjct 8433 CCACCACGCAGACGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 8374
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||| ||||| ||||||||||| ||||| | ||||
Sbjct 8373 AGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 8314
Query 41756 A 41756
|
Sbjct 8313 A 8313
>seq121
Length=508097
Score = 95.1 bits (104), Expect = 1e-14
Identities = 75/90 (83%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| |||||| ||||||||| | || || |||||||||||||||||
Sbjct 178716 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 178657
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCT 41760
||||| ||||| ||||| | ||||| |||
Sbjct 178656 GATCAGACGCTGCTGGTCGGGGGGAATGCT 178627
>seq112
Length=444765
Score = 89.7 bits (98), Expect = 5e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 41682 TGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCT 41741
|||| ||||| ||||||||||| |||| |||||||||||||| ||||| ||||||||||
Sbjct 44135 TGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAGGCGCT 44194
Query 41742 GTTGGTCCGCGGGAACGCT 41760
| ||||| | |||| |||
Sbjct 44195 GCTGGTCAGGAGGAATGCT 44213
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/109 (78%), Gaps = 1/109 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | || ||||| || || ||||||||||||||| ||||||||
Sbjct 43324 GCCGCCACGGAGACGCAGGACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGA 43383
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATAT-CAGGCGCTG 41742
||| |||||| |||| || | ||| | || ||||| || ||||||||
Sbjct 43384 GAGCGTGCGCCCGTCCTCCAACTGTCTTCCCGCGAAGATAGAGGCGCTG 43432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462299515651200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |