Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq38 129 6e-25 >seq38 Length=96116 Score = 129 bits (142), Expect = 6e-25 Identities = 298/449 (66%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 16943 TTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA 17002 || ||||| | || | || || ||||| ||| || | |||||||| | |||| Sbjct 70027 TTGAGATGACTGAAAAGCAAGCACGCGAAGTCGGTGTGCATGCCCTCGTCACGCGAGATA 70086 Query 17003 AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCG 17062 || || || || || || | ||||||||| || || ||||| | ||| || || | | Sbjct 70087 AGCTCATTGGAGAACGTGAGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAG 70146 Query 17063 GCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG 17122 || || || ||||| ||||| |||||||| || | || || || | | || || ||| Sbjct 70147 GCAAAGGAACCAGAGAAGAAGATACCCTCCACAGCCGCGAAAGCCACGAGCCGCTCCGCG 70206 Query 17123 TACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAA 17182 | | | || |||| | ||||| | | |||| || || || | ||| |||||| Sbjct 70207 AAGGCGGACTCCTTGTCAGAGATCCAGTGCAAAGCCCAGTCCGCCTTCTTCTTGATGCAA 70266 Query 17183 TCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 ||||| || ||||| | || | | ||| | || | || | || ||||| Sbjct 70267 GGAATCGTCTCGATGGCGTCGAAAAGGTGCTCGCGCTGCTTGGGATCCTTGATGTACGTG 70326 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 |||||||| || ||| | || ||||| ||||||||||| ||||| || ||||| Sbjct 70327 TCGATGAGCAGCGAGTATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 70386 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362 ||||| || || || || || || || | |||| || || | || || |||||| Sbjct 70387 AAGCAGCGTGCCTCGGCGGCCTGGACCTCATTGGAGAACCGCTCGACAAGGTTCTCGTTC 70446 Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 ||||||||||| || ||||| || || Sbjct 70447 ACGATGCCGTCCGAGGCAGCGAAGAAGGC 70475 Score = 129 bits (142), Expect = 6e-25 Identities = 287/431 (67%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| || || ||| || | |||||||||| ||||||||| |||||||| || ||| Sbjct 72649 AGACACGCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTC 72590 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 ||||| |||||| || || ||||| | ||| || || |||||||||||||| || ||| Sbjct 72589 AACCCCGGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAG 72530 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || | |||||||| | ||||| |||| | | || || || | | || Sbjct 72529 AACACGCCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGCAAACACTGAACGCTCGTCC 72470 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 |||||| | | |||| || || || | || || || || || ||||| Sbjct 72469 TCAATCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGTCGATGGCG 72410 Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 | || | | | ||| |||| | |||||||| |||||||| || |||| Sbjct 72409 TCGAACAGGAACGCGCGTTCAGCGGGGTCCTTGATATACGTGTCGATGAGCAGCGAGTAC 72350 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 | || ||||| | ||||| || ||||| || || |||||||| || || || || Sbjct 72349 GTCTCCGAGTGCACATTCTCGATCATGATCTGGAAGCCATAAAAGCAGCGCGCCTCGGCG 72290 Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 || || || |||| || || | ||||| ||||||||||||||||| ||| Sbjct 72289 GCCTGTACCTCGTTAGAGAACCGCTCGACGAGATTCTCGTTCACGATGCCGTCCGAGGCG 72230 Query 17381 GCGAAAAACGC 17391 ||||| || || Sbjct 72229 GCGAAGAAAGC 72219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517483184000640