Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2039 140 4e-28 >seq2039 Length=45597 Score = 140 bits (154), Expect = 4e-28 Identities = 230/326 (71%), Gaps = 8/326 (2%) Strand=Plus/Minus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 ||||| ||||| ||| | ||| || ||| || | ||||||||| | |||||||| Sbjct 9046 TAGACACTCATCTTCATCGCGATACTCGGGTGCGGATCGTAGCCCTCTACAACAAAGTCC 8987 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACC---CGCCTCAGGATCCTGAGCCTGGGAAAG 145653 ||| | |||||||||| |||| || ||| |||| | ||| | |||| || Sbjct 8986 TCCATCGTGAAGTCATCGATGTTGTCTACCTTGCGCCGCC--ATCGA-ATTTTGGGGAAA 8930 Query 145654 GGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTG 145712 ||||| || |||| | || ||||| | ||| || | || || |||| | |||||||||| Sbjct 8929 GGCCGCGG-CTCCCGCTCGAGCTGAACCTTGAGCGCGTCGACATGGTCGCGGTAGACGTG 8871 Query 145713 CGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCAT 145772 |||||| || || | |||| || || ||| | | |||| ||| || ||||| Sbjct 8870 CGCGTCGCCGAGCTGGATAATGAGCTCTTGAGGTTCGGTGTCGGTGACGTGCGCCACCAT 8811 Query 145773 GTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGA 145832 | ||| ||||||| ||| ||| ||||||||||| | || || |||| ||| | || Sbjct 8810 ATGGGTGAGCAGGGCGTAAGAGGCGATGTTGAAGGGGATACCGAGGCCCAGGTCGGCGGA 8751 Query 145833 GCGCTGGTACAGCTGGCAGGAGAGCT 145858 ||||||||||| | | |||||||||| Sbjct 8750 GCGCTGGTACATCAGACAGGAGAGCT 8725 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 145995 GAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAA 146054 |||||| |||||||||| || ||||| || | | | || ||||| || || || Sbjct 8503 GAGCTGATCCACGCCCTTGCCGGTATAATCGGTGTCGCAATCGACGTATTGCGCGCCAAA 8444 Query 146055 GTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTG-TGCCCCAGCC 146113 ||| ||||| |||||||| || |||||||| ||||| || ||| | | || || | | Sbjct 8443 GTGTCTCCATTGGAACCCATACACGGGCCCTAGGTCGCCCT-CTCGCCGATGTCCTAAAC 8385 Query 146114 CGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGG 146173 | | ||||||| ||| || ||||| | ||||||||||||| ||| |||||| Sbjct 8384 CACGCTTCTCGAGGAACTCCTTCGAGCCGTTACCATCCCAGATCTTGATCCCCTTCGCGG 8325 Query 146174 AGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTC 146222 | |||| |||||||||||| | || | || ||||| | ||||| || Sbjct 8324 ACAGCTGTTTGGAGTCCGTGCATCCGCGTATAAACCATAAGAGCTCCTC 8276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590005636737920