Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1153 129 7e-25 seq7597 107 2e-18 >seq1153 Length=45894 Score = 129 bits (142), Expect = 7e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || | || || || | || || |||||||| ||| Sbjct 2317 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTGCCA 2376 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| || || ||||||||||||| ||| | || |||||||||| ||| | || | | Sbjct 2377 GCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTT 2435 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 ||| | | | ||||||| || || || |||| |||||||| || ||||| | ||| Sbjct 2436 CACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCCGTCAACGT 2495 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| |||||||| ||||| Sbjct 2496 CTTGACAAAGATCTGCAT 2513 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || |||||||| || ||||| Sbjct 1806 CTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1865 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| ||| | | |||||||||| ||| || || | | Sbjct 1866 GATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACATT 1925 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||| || || |||| |||||||| ||||| || || ||||| || Sbjct 1926 GTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAAC 1985 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 1986 GAAGATTTGCAT 1997 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| ||||| || ||||| | || || || | || || || ||||| ||| Sbjct 2596 GTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGCTTGCCA 2655 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || ||||| ||||||||||| | || | | |||||||||| ||| || || Sbjct 2656 GCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTC 2715 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | ||||| ||| || || |||| |||||||| ||||| || | ||| Sbjct 2716 ACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTC 2775 Query 43167 TTTACAAAGATTTGCAT 43183 || |||||||| ||||| Sbjct 2776 TTGACAAAGATCTGCAT 2792 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| |||| || || || |||| || || ||||| ||||| || Sbjct 2034 CTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCAGCAAA 2093 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||| ||| ||| ||| |||| ||| Sbjct 2094 GATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGGATCTTTGCCTTGA-CGT 2152 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || |||||| || || | ||||| || || ||||| || ||||| | Sbjct 2153 TGTCGATTGTATCCGACGATTCAACCTCCAAGGTGATCGTCTTACCCGTGAGGGTCTTGA 2212 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 2213 CGAAGATTTGCAT 2225 >seq7597 Length=53330 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | || || || |||| || |||||||| |||||||| Sbjct 52031 CTCCTTCTGGATGTTGTAATCCGACAAGGTACGGCCGTCCTCCAGCTGCTTTCCAGCGAA 51972 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | || ||||||||| ||| || || | | Sbjct 51971 GATAAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTT 51912 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || ||| || || || | ||||||||| ||||| || | |||||| || Sbjct 51911 ATCGATGGTATCCGACGACTCGACCTCAAGCGTGATGGTCTTGCCAGTCAACGTCTTCAC 51852 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 51851 GAAGATTTGCAT 51840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571748638797440