Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1153 116 3e-21 seq7597 105 5e-18 >seq1153 Length=45894 Score = 116 bits (128), Expect = 3e-21 Identities = 153/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || |||||||||||||| |||||||||||| || |||| | || || Sbjct 2304 ACCAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTC 2363 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || ||||| |||| ||||| |||||||| || | |||||||||||| Sbjct 2364 AAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 2423 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | |||| | ||| ||||| | || || ||||| Sbjct 2424 AATCTTCGCCTTCACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTT 2483 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| ||||| |||||||| |||||| Sbjct 2484 CCCCGTCAACGTCTTGACAAAGATCTGCATG 2514 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || |||||||||||||||||||| || ||| || ||| | || |||||||| Sbjct 2589 GTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTG 2648 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || || | ||||| ||||| ||||| | ||||||||||||| || || Sbjct 2649 CTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTT 2708 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||| ||||| | ||| || |||||||| || Sbjct 2709 AGCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 2768 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||| |||||||| ||||| Sbjct 2769 CAAAGTCTTGACAAAGATCTGCAT 2792 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| | || || || || || |||||||| Sbjct 1806 CTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1865 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| |||||||| || | ||||||||||||| || || ||| || Sbjct 1866 GATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACATT 1925 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| ||| ||||| | || || |||||||| ||||||||||| || Sbjct 1926 GTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAAC 1985 Query 45325 AAAGATTTGCAT 45336 ||||||||||| Sbjct 1986 GAAGATTTGCAT 1997 >seq7597 Length=53330 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| ||||| || || |||||||| Sbjct 51522 CTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAA 51463 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || || ||||||||||| | ||||||||||||| ||| || ||| || Sbjct 51462 GATAAGACGTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACGTT 51403 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| ||| ||||| | ||| |||||||| ||||| || ||||| || Sbjct 51402 GTCAATGGTGTCTGACGACTCAACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 51343 Query 45325 AAAGATTTGCATG 45337 || || |||||| Sbjct 51342 GAAAATCTGCATG 51330 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | | |||||||| || || ||||||||| |||||||| || Sbjct 52067 GCCACCACGCAAGCGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 52008 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || |||| ||||| || ||||| ||||| || | ||||| ||||||||||| Sbjct 52007 CAAGGTACGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 51948 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| || || ||| || | | | | ||| ||| || Sbjct 51947 GATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTATCGATGGTATCCGACGACTCGAC 51888 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | || || |||||||| |||| |||||||| |||||||||||| Sbjct 51887 CTCAAGCGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATTTGCATG 51839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395028745082608