Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq38 107 1e-18 seq8570 98.7 7e-16 >seq38 Length=96116 Score = 107 bits (118), Expect = 1e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 || |||||||| || || ||||| | || || ||||| || || ||||| ||||||||| Sbjct 72504 GCATTTGCGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTTCTGGCTG 72563 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| || | | ||||| |||||| |||| || |||||| | || ||||| ||||| Sbjct 72564 AAGAAGCGGGGGTTGATGCCGGGGTTGACGTTCTCTAACGAGCTTATCAGCCGAGACGAG 72623 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 ||| | ||| |||||||| ||| | || || Sbjct 72624 GGTATGCACACCGACTTTGCGTGTCTCCTCTT 72655 >seq8570 Length=955 Score = 98.7 bits (108), Expect = 7e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 33535 AAATGCGTCAAGATCAAGCTGCGCAAGATACGCATACCAGAGATGGGCGACAAGTTTGCA 33594 |||| |||||||||| | ||| | || |||||| |||| ||||||||||| || Sbjct 687 AAATTCGTCAAGATCCGTGTCCGCTCCACGCGTATACCACAGATCGGCGACAAGTTCGCT 628 Query 33595 TCGT-TCACGGCCCAGAAGGGCACGTGCGGCATGATGTACGACCAGTGGGACATGCCGTT 33653 ||| |||||| | ||||||| || ||| || | ||| |||| |||||||||||| Sbjct 627 TCGCGTCACGGTC-AGAAGGGTACCATCGGTATCACCTACCGCCAGGAGGACATGCCGTT 569 Query 33654 CACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCGCATGCGTTCCCCTCGCGCAT 33713 |||||| || ||| | || ||| | |||||||||| || || | ||||| || || Sbjct 568 CACGGCGGAGGGCATCACGCCCGACATCATCATCAACCCCCACGCCATTCCCTCTCGTAT 509 Query 33714 GAC 33716 ||| Sbjct 508 GAC 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356191712272144