Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7597 95.1 1e-14 seq1153 84.2 2e-11 >seq7597 Length=53330 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| |||||| || || | | || || ||||| || ||| Sbjct 51755 GTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTCCGCCCATCCTCAAGCTGCTTGCCA 51696 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TT 139686 || |||||| || |||||||| || || ||||| || ||||| ||| | || | || Sbjct 51695 GCGAAGATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGCCTT 51637 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | || |||| || || ||||||| || | ||||||||||| | ||| Sbjct 51636 TACGTTGTCGATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGTAAGCGT 51577 Query 139747 TTTTACGAATATTTGCATA 139765 ||| ||||| || |||||| Sbjct 51576 TTTCACGAAGATCTGCATA 51558 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | |||| ||||| ||||||||||| || ||||| || || Sbjct 51330 GCCGCCACGGAGACGGAGGACTAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCCGA 51271 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||||||||| || || ||| ||||||| || ||||| || ||||| Sbjct 51270 GAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGAGG 51211 Query 139657 TATGC 139661 |||| Sbjct 51210 GATGC 51206 >seq1153 Length=45894 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || ||||||||||||||| | || | || || || || || |||||| | Sbjct 2601 CTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGCTTGCCAGCAAA 2660 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||| ||||| ||||| || ||||| || || || ||||| ||| || || | | Sbjct 2661 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTCACATT 2720 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||| | | ||| ||||| | ||| | |||||||||||||| || || || Sbjct 2721 GTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTGAC 2780 Query 139753 GAATATTTGCATAGCT 139768 || || |||||| || Sbjct 2781 AAAGATCTGCATACCT 2796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496004174681600