Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq38 102 1e-16 >seq38 Length=96116 Score = 102 bits (112), Expect = 1e-16 Identities = 167/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || ||| ||||| ||||||||||| || || || ||||| || ||||| | Sbjct 72647 ACACGCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTCAA 72588 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| | || ||||| || ||||| || |||| || || ||||| || ||||| Sbjct 72587 CCCCGGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAA 72528 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA-ACTG-GCGCT-GTCATG 50135 | || || ||||| ||||| || || || ||||| || | |||| |||| ||| | Sbjct 72527 CACGCCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGCAAACACTGAACGCTCGTCCTC 72468 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 ||||| ||||| || |||||||| | ||| || || || || ||||| Sbjct 72467 AATCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGTCGATGGC 72411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718182176782720