Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7597 116 9e-21 seq1153 93.3 1e-13 seq38 89.7 1e-12 >seq7597 Length=53330 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || | || | || || || || || || ||| Sbjct 51755 GTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTCCGCCCATCCTCAAGCTGCTTGCCA 51696 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| |||||||| || || || || || ||||||||||| || ||| Sbjct 51695 GCGAAGATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTT 51636 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||| | ||| ||||| || || |||||||| || ||||| ||| Sbjct 51635 ACGTTGTCGATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGTAAGCGTT 51576 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 51575 TTCACGAAGATCTGCAT 51559 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || ||||| || || ||||| || || || | ||||| Sbjct 51542 AGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGTCCGTCC 51483 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | || || || ||||| || || || || ||| Sbjct 51482 TCCAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCGGGAGGGATACCCTCCTTGTCC 51423 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | ||| || | || ||||| || || || ||| Sbjct 51422 TGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGACGACTCAACCTCAAGGGTGATCGTC 51363 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 51362 TTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 51331 >seq1153 Length=45894 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || | || | ||| || || || || || ||||| || Sbjct 2323 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 2382 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || || || || || || || ||||||||||| || || || || Sbjct 2383 ATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2442 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || ||| || || ||||| || || || ||||| || || | || || ||| Sbjct 2443 TCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCCGTCAACGTCTTGACA 2502 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 2503 AAGATCTGCAT 2513 >seq38 Length=96116 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 269122 TTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTT 269181 || |||||| || | || || ||||| || || || || | ||||| || ||||| || Sbjct 72487 TTGCGGAGA--GGCTGGTCGCATTTGCGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTT 72544 Query 269182 TGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGA 269241 ||||| || || ||| ||||||| | || | ||||| || || || ||||||||||| Sbjct 72545 CGCCGCCATTTTCTGGCTGAAGAAGCGGGGGTTGATGCCGGGGTTGACGTTCTCTAACGA 72604 Query 269242 ATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 | || ||| | ||||| ||| | ||| |||||| || ||| Sbjct 72605 GCTTATCAGCCGAGACGAGGGTATGCACACCGACTTTGCGTGT 72647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151256069886784