Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7597 95.1 1e-14 seq1153 95.1 1e-14 >seq7597 Length=53330 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || ||||||||||| | ||| ||| | ||||| |||||| Sbjct 51761 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTCCGCCCATCCTCAAGCTGC 51702 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || || ||||||||||| || | | ||||||||| ||| ||| Sbjct 51701 TTGCCAGCGAAGATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATCTTC 51642 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || |||||||||| || || ||| | || || || || |||| Sbjct 51641 GCCTTTACGTTGTCG--ATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGG 51584 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || |||||||| || |||||||| Sbjct 51583 TAAGCGTTTTCACGAAGATCTGCAT 51559 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| || | | ||| ||||||||| ||| Sbjct 52271 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCCTCCAACTG 52212 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||||||| || | | ||||||||| || || Sbjct 52211 CTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 52152 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 | ||||| | | || || || |||| |||||| ||| | || ||||| || || Sbjct 52151 CGCCTTGACGTTGTCG--ATCGTGTCGGAAGACTCGACCTCCAACGTAATGGTCTTTCCC 52094 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||| |||||||| Sbjct 52093 GTAAGGGTCTTGACAAAGATCTGCAT 52068 >seq1153 Length=45894 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||||||||||| || |||||||| || | ||| || | ||||| |||||| Sbjct 2311 TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGC 2370 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | ||||||||| || ||| | | ||||||||| ||| ||| Sbjct 2371 TTGCCAGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTC 2430 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || || || |||| |||||| ||||| || ||||| || || | Sbjct 2431 GCCTTCACGTTGTCG--ATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCCG 2488 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || || ||||| |||||||| Sbjct 2489 TCAACGTCTTGACAAAGATCTGCAT 2513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421201667177648